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annotate imagej2_macros.xml @ 0:dfe318d97378 draft

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planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
author iuc
date Tue, 09 Jun 2015 12:22:03 -0400
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dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <macros>
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3 <xml name="fiji_headless_requirements">
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4 <requirements>
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5 <requirement type="package" version="20141125">fiji</requirement>
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6 </requirements>
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7 </xml>
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8 <xml name="python_bioformats_requirements">
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9 <requirements>
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10 <requirement type="package" version="20141125">fiji</requirement>
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11 <requirement type="package" version="1.0.11">javabridge</requirement>
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12 <requirement type="package" version="1.9">numpy</requirement>
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13 <requirement type="package" version="1.0.4">python_bioformats</requirement>
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14 </requirements>
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15 </xml>
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16 <xml name="stdio">
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17 <stdio>
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18 <exit_code range="1:"/>
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19 <exit_code range=":-1"/>
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20 <regex match="Error:"/>
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21 <regex match="Exception:"/>
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22 </stdio>
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23 </xml>
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24 <xml name="image_type">
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25 <param name="image_type" type="select" label="Image type">
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26 <option value="8-bit_white" selected="True">8-bit white</option>
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27 <option value="8-bit_black">8-bit black</option>
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28 <option value="8-bit_random">8-bit random</option>
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29 <option value="8-bit_ramp">8-bit ramp</option>
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30 <option value="16-bit_white">16-bit white</option>
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31 <option value="16-bit_black">16-bit black</option>
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32 <option value="16-bit_random">16-bit random</option>
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33 <option value="16-bit_ramp">16-bit ramp</option>
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34 <option value="32-bit_white">32-bit white</option>
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35 <option value="32-bit_black">32-bit black</option>
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36 <option value="32-bit_random">32-bit random</option>
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37 <option value="32-bit_ramp">32-bit ramp</option>
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38 <option value="RGB_white">RGB white</option>
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39 <option value="RGB_black">RGB black</option>
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40 <option value="RGB_random">RGB random</option>
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41 <option value="RGB_ramp">RGB ramp</option>
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42 </param>
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43 </xml>
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44 <xml name="max_heap_size_type_conditional">
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45 <conditional name="set_max_heap_size">
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46 <param name="max_heap_size_type" type="select" label="Maximum size of the memory allocation pool used by the JVM" help="This value must be a multiple of 1024 or it will be ignored and the system default will be used.">
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47 <option value="default" selected="True">Do not set</option>
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48 <option value="megabytes">Set in megabytes</option>
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49 <option value="gigabytes">Set in gigabytes</option>
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50 </param>
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51 <when value="default">
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52 <param name="max_heap_size" type="integer" value="0" label="Do not set" help="Use system default"/>
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53 </when>
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54 <when value="megabytes">
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55 <param name="max_heap_size" type="integer" value="512" min="256" label="Maximum size, in megabytes, of the memory allocation pool" help="Examples: 256, 512, etc."/>
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56 </when>
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57 <when value="gigabytes">
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58 <param name="max_heap_size" type="integer" value="1" min="1" label="Maximum size, in gigabytes, of the memory allocation pool" help="Examples: 1, 2, etc."/>
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59 </when>
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60 </conditional>
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61 </xml>
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62 <xml name="image_datatypes">
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63 <option value="bmp">bmp</option>
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64 <option value="gif">gif</option>
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65 <option value="jpg">jpg</option>
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66 <option value="png" selected="true">png</option>
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67 <option value="tiff">tiff</option>
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68 </xml>
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69 <xml name="fiji_headless_citations">
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70 <citations>
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71 <citation type="doi">10.1038/nmeth.2102</citation>
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72 </citations>
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73 </xml>
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74 <xml name="citations">
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75 <citations>
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76 <citation type="doi">10.1038/nmeth.2102</citation>
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77 <citation type="doi">10.1038/nmeth.2019</citation>
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78 <citation type="doi">10.1083/jcb.201004104</citation>
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79 </citations>
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80 </xml>
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81 </macros>