Mercurial > repos > iuc > imagej2_create_image

comparison imagej2_macros.xml @ 0:dfe318d97378 draft

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planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
author iuc
date Tue, 09 Jun 2015 12:22:03 -0400
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1 <?xml version='1.0' encoding='UTF-8'?>
2 <macros>
3 <xml name="fiji_headless_requirements">
4 <requirements>
5 <requirement type="package" version="20141125">fiji</requirement>
6 </requirements>
7 </xml>
8 <xml name="python_bioformats_requirements">
9 <requirements>
10 <requirement type="package" version="20141125">fiji</requirement>
11 <requirement type="package" version="1.0.11">javabridge</requirement>
12 <requirement type="package" version="1.9">numpy</requirement>
13 <requirement type="package" version="1.0.4">python_bioformats</requirement>
14 </requirements>
15 </xml>
16 <xml name="stdio">
17 <stdio>
18 <exit_code range="1:"/>
19 <exit_code range=":-1"/>
20 <regex match="Error:"/>
21 <regex match="Exception:"/>
22 </stdio>
23 </xml>
24 <xml name="image_type">
25 <param name="image_type" type="select" label="Image type">
26 <option value="8-bit_white" selected="True">8-bit white</option>
27 <option value="8-bit_black">8-bit black</option>
28 <option value="8-bit_random">8-bit random</option>
29 <option value="8-bit_ramp">8-bit ramp</option>
30 <option value="16-bit_white">16-bit white</option>
31 <option value="16-bit_black">16-bit black</option>
32 <option value="16-bit_random">16-bit random</option>
33 <option value="16-bit_ramp">16-bit ramp</option>
34 <option value="32-bit_white">32-bit white</option>
35 <option value="32-bit_black">32-bit black</option>
36 <option value="32-bit_random">32-bit random</option>
37 <option value="32-bit_ramp">32-bit ramp</option>
38 <option value="RGB_white">RGB white</option>
39 <option value="RGB_black">RGB black</option>
40 <option value="RGB_random">RGB random</option>
41 <option value="RGB_ramp">RGB ramp</option>
42 </param>
43 </xml>
44 <xml name="max_heap_size_type_conditional">
45 <conditional name="set_max_heap_size">
46 <param name="max_heap_size_type" type="select" label="Maximum size of the memory allocation pool used by the JVM" help="This value must be a multiple of 1024 or it will be ignored and the system default will be used.">
47 <option value="default" selected="True">Do not set</option>
48 <option value="megabytes">Set in megabytes</option>
49 <option value="gigabytes">Set in gigabytes</option>
50 </param>
51 <when value="default">
52 <param name="max_heap_size" type="integer" value="0" label="Do not set" help="Use system default"/>
53 </when>
54 <when value="megabytes">
55 <param name="max_heap_size" type="integer" value="512" min="256" label="Maximum size, in megabytes, of the memory allocation pool" help="Examples: 256, 512, etc."/>
56 </when>
57 <when value="gigabytes">
58 <param name="max_heap_size" type="integer" value="1" min="1" label="Maximum size, in gigabytes, of the memory allocation pool" help="Examples: 1, 2, etc."/>
59 </when>
60 </conditional>
61 </xml>
62 <xml name="image_datatypes">
63 <option value="bmp">bmp</option>
64 <option value="gif">gif</option>
65 <option value="jpg">jpg</option>
66 <option value="png" selected="true">png</option>
67 <option value="tiff">tiff</option>
68 </xml>
69 <xml name="fiji_headless_citations">
70 <citations>
71 <citation type="doi">10.1038/nmeth.2102</citation>
72 </citations>
73 </xml>
74 <xml name="citations">
75 <citations>
76 <citation type="doi">10.1038/nmeth.2102</citation>
77 <citation type="doi">10.1038/nmeth.2019</citation>
78 <citation type="doi">10.1083/jcb.201004104</citation>
79 </citations>
80 </xml>
81 </macros>