Mercurial > repos > iuc > imagej2_convert_format

annotate imagej2_macros.xml @ 2:cf9ed4ef641d draft

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author iuc
date Fri, 26 Jun 2015 05:28:18 -0400
parents 312e8ce708b1
children 9a24b7e68010
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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <macros>
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3 <xml name="fiji_headless_requirements">
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4 <requirements>
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5 <requirement type="package" version="20141125">fiji</requirement>
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6 </requirements>
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7 </xml>
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8 <xml name="python_bioformats_requirements">
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9 <requirements>
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10 <requirement type="package" version="20141125">fiji</requirement>
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11 <requirement type="package" version="1.0.11">javabridge</requirement>
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12 <requirement type="package" version="1.9">numpy</requirement>
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13 <requirement type="package" version="1.0.4">python_bioformats</requirement>
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14 </requirements>
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15 </xml>
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16 <xml name="stdio">
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17 <stdio>
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18 <exit_code range="1:"/>
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19 <exit_code range=":-1"/>
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20 <regex match="Error:"/>
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21 <regex match="Exception:"/>
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22 </stdio>
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23 </xml>
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24 <xml name="image_type">
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25 <param name="image_type" type="select" label="Image type">
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26 <option value="8-bit_white" selected="True">8-bit white</option>
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27 <option value="8-bit_black">8-bit black</option>
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28 <option value="8-bit_random">8-bit random</option>
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29 <option value="8-bit_ramp">8-bit ramp</option>
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30 <option value="16-bit_white">16-bit white</option>
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31 <option value="16-bit_black">16-bit black</option>
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32 <option value="16-bit_random">16-bit random</option>
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33 <option value="16-bit_ramp">16-bit ramp</option>
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34 <option value="32-bit_white">32-bit white</option>
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35 <option value="32-bit_black">32-bit black</option>
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36 <option value="32-bit_random">32-bit random</option>
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37 <option value="32-bit_ramp">32-bit ramp</option>
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38 <option value="RGB_white">RGB white</option>
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39 <option value="RGB_black">RGB black</option>
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40 <option value="RGB_random">RGB random</option>
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41 <option value="RGB_ramp">RGB ramp</option>
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42 </param>
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43 </xml>
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44 <xml name="max_heap_size_type_conditional">
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45 <conditional name="set_max_heap_size">
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46 <param name="max_heap_size_type" type="select" label="Maximum size of the memory allocation pool used by the JVM" help="This value must be a multiple of 1024 or it will be ignored and the system default will be used.">
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47 <option value="default" selected="True">Do not set</option>
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48 <option value="megabytes">Set in megabytes</option>
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49 <option value="gigabytes">Set in gigabytes</option>
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50 </param>
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51 <when value="default">
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52 <param name="max_heap_size" type="integer" value="0" label="Do not set" help="Use system default"/>
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53 </when>
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54 <when value="megabytes">
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55 <param name="max_heap_size" type="integer" value="512" min="256" label="Maximum size, in megabytes, of the memory allocation pool" help="Examples: 256, 512, etc."/>
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56 </when>
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57 <when value="gigabytes">
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58 <param name="max_heap_size" type="integer" value="1" min="1" label="Maximum size, in gigabytes, of the memory allocation pool" help="Examples: 1, 2, etc."/>
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59 </when>
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60 </conditional>
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61 </xml>
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62 <token name="@max_heap_size_args@">
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63 --max_heap_size_type $set_max_heap_size.max_heap_size_type
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64 --max_heap_size $set_max_heap_size.max_heap_size
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65 </token>
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66 <xml name="image_datatypes">
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67 <option value="bmp">bmp</option>
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68 <option value="gif">gif</option>
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69 <option value="jpg">jpg</option>
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70 <option value="png" selected="true">png</option>
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71 <option value="tiff">tiff</option>
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72 </xml>
2
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73 <xml name="bunwarpj_citations">
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74 <citations>
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75 <citation type="bibtex">
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76 @InProceedings(Arganda-Carreras2006,
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77 author = "Ignacio Arganda-Carreras and
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78 Carlos Oscar S{\'a}nchez Sorzano and
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79 Roberto Marabini and
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80 Jos{\'e} Mar\'{\i}a Carazo and
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81 Carlos Ortiz-de-Solorzano and
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82 Jan Kybic",
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83 title = "Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization",
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84 publisher = "Springer Berlin / Heidelberg",
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85 booktitle = "Computer Vision Approaches to Medical Image Analysis",
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86 series = "Lecture Notes in Computer Science",
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87 year = "2006",
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88 volume = "4241",
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89 pages = "85-95",
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90 month = "May",
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91 city = "Graz, Austria")
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92 </citation>
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93 <citation type="doi">10.1038/nmeth.2019</citation>
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94 </citations>
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95 </xml>
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96 <xml name="fiji_headless_citations">
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97 <citations>
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98 <citation type="doi">10.1038/nmeth.2102</citation>
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99 </citations>
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100 </xml>
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101 <xml name="bioformats_fiji_javabridge_citations">
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102 <citations>
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103 <citation type="doi">10.1038/nmeth.2102</citation>
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104 <citation type="doi">10.1038/nmeth.2019</citation>
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105 <citation type="doi">10.1083/jcb.201004104</citation>
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106 </citations>
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107 </xml>
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108 </macros>