Mercurial > repos > iuc > imagej2_convert_format
diff imagej2_macros.xml @ 0:312e8ce708b1 draft
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
| author | iuc |
|---|---|
| date | Tue, 09 Jun 2015 12:21:40 -0400 |
| parents | |
| children | cf9ed4ef641d |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/imagej2_macros.xml Tue Jun 09 12:21:40 2015 -0400 @@ -0,0 +1,81 @@ +<?xml version='1.0' encoding='UTF-8'?> +<macros> + <xml name="fiji_headless_requirements"> + <requirements> + <requirement type="package" version="20141125">fiji</requirement> + </requirements> + </xml> + <xml name="python_bioformats_requirements"> + <requirements> + <requirement type="package" version="20141125">fiji</requirement> + <requirement type="package" version="1.0.11">javabridge</requirement> + <requirement type="package" version="1.9">numpy</requirement> + <requirement type="package" version="1.0.4">python_bioformats</requirement> + </requirements> + </xml> + <xml name="stdio"> + <stdio> + <exit_code range="1:"/> + <exit_code range=":-1"/> + <regex match="Error:"/> + <regex match="Exception:"/> + </stdio> + </xml> + <xml name="image_type"> + <param name="image_type" type="select" label="Image type"> + <option value="8-bit_white" selected="True">8-bit white</option> + <option value="8-bit_black">8-bit black</option> + <option value="8-bit_random">8-bit random</option> + <option value="8-bit_ramp">8-bit ramp</option> + <option value="16-bit_white">16-bit white</option> + <option value="16-bit_black">16-bit black</option> + <option value="16-bit_random">16-bit random</option> + <option value="16-bit_ramp">16-bit ramp</option> + <option value="32-bit_white">32-bit white</option> + <option value="32-bit_black">32-bit black</option> + <option value="32-bit_random">32-bit random</option> + <option value="32-bit_ramp">32-bit ramp</option> + <option value="RGB_white">RGB white</option> + <option value="RGB_black">RGB black</option> + <option value="RGB_random">RGB random</option> + <option value="RGB_ramp">RGB ramp</option> + </param> + </xml> + <xml name="max_heap_size_type_conditional"> + <conditional name="set_max_heap_size"> + <param name="max_heap_size_type" type="select" label="Maximum size of the memory allocation pool used by the JVM" help="This value must be a multiple of 1024 or it will be ignored and the system default will be used."> + <option value="default" selected="True">Do not set</option> + <option value="megabytes">Set in megabytes</option> + <option value="gigabytes">Set in gigabytes</option> + </param> + <when value="default"> + <param name="max_heap_size" type="integer" value="0" label="Do not set" help="Use system default"/> + </when> + <when value="megabytes"> + <param name="max_heap_size" type="integer" value="512" min="256" label="Maximum size, in megabytes, of the memory allocation pool" help="Examples: 256, 512, etc."/> + </when> + <when value="gigabytes"> + <param name="max_heap_size" type="integer" value="1" min="1" label="Maximum size, in gigabytes, of the memory allocation pool" help="Examples: 1, 2, etc."/> + </when> + </conditional> + </xml> + <xml name="image_datatypes"> + <option value="bmp">bmp</option> + <option value="gif">gif</option> + <option value="jpg">jpg</option> + <option value="png" selected="true">png</option> + <option value="tiff">tiff</option> + </xml> + <xml name="fiji_headless_citations"> + <citations> + <citation type="doi">10.1038/nmeth.2102</citation> + </citations> + </xml> + <xml name="citations"> + <citations> + <citation type="doi">10.1038/nmeth.2102</citation> + <citation type="doi">10.1038/nmeth.2019</citation> + <citation type="doi">10.1083/jcb.201004104</citation> + </citations> + </xml> +</macros>
