Mercurial > repos > iuc > hisat2

changeset 26:d7424ca41330 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hisat2 commit 67cc9b86dcb40c7691cc85b77428117be25d6046
author iuc
date Thu, 15 Nov 2018 10:30:49 -0500
parents 89e375886d06
children aa869f0265ca
files hisat2.xml
diffstat 1 files changed, 4 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/hisat2.xml	Tue Sep 04 04:03:09 2018 -0400
+++ b/hisat2.xml	Thu Nov 15 10:30:49 2018 -0500
@@ -290,7 +290,9 @@
 ## Reporting options
 
 #if str($adv.reporting_options.reporting_options_selector) == "advanced":
-    -k ${adv.reporting_options.max_primary}
+    #if str($adv.reporting_options.max_primary) != '':
+        -k ${adv.reporting_options.max_primary}
+    #end if
 #end if
 
 
@@ -613,6 +615,7 @@
             <param name="history_item" ftype="fasta" value="phiX.fa" />
             <param name="input_1" ftype="fastqsanger" value="hisat_input_1_forward.fastq" />
             <param name="input_2" ftype="fastqsanger" value="hisat_input_1_reverse.fastq" />
+            <param name="adv|reporting_options|reporting_options_selector" value="advanced"/>
             <output name="output_alignments" file="hisat_output_1.bam" ftype="bam" lines_diff="2" />
         </test>
         <!-- Ensure advanced scoring options work -->