# HG changeset patch
# User iuc
# Date 1542295849 18000
# Node ID d7424ca41330bc4ab18891505b43091a3027e229
# Parent  89e375886d06df8e6852fe1a201153f34add227b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hisat2 commit 67cc9b86dcb40c7691cc85b77428117be25d6046

diff -r 89e375886d06 -r d7424ca41330 hisat2.xml
--- a/hisat2.xml	Tue Sep 04 04:03:09 2018 -0400
+++ b/hisat2.xml	Thu Nov 15 10:30:49 2018 -0500
@@ -290,7 +290,9 @@
 ## Reporting options
 
 #if str($adv.reporting_options.reporting_options_selector) == "advanced":
-    -k ${adv.reporting_options.max_primary}
+    #if str($adv.reporting_options.max_primary) != '':
+        -k ${adv.reporting_options.max_primary}
+    #end if
 #end if
 
 
@@ -613,6 +615,7 @@
             <param name="history_item" ftype="fasta" value="phiX.fa" />
             <param name="input_1" ftype="fastqsanger" value="hisat_input_1_forward.fastq" />
             <param name="input_2" ftype="fastqsanger" value="hisat_input_1_reverse.fastq" />
+            <param name="adv|reporting_options|reporting_options_selector" value="advanced"/>
             <output name="output_alignments" file="hisat_output_1.bam" ftype="bam" lines_diff="2" />
         </test>
         <!-- Ensure advanced scoring options work -->