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annotate visualization.xml @ 2:bb873b309fce draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit 392f981f8dd08fb4b98526cba17074736ff15b38"
author iuc
date Thu, 23 Jan 2020 19:07:29 +0000
parents a365150d73c0
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bb873b309fce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit 392f981f8dd08fb4b98526cba17074736ff15b38"
iuc
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1 <tool id="heinz_visualization" name="Visualize" version="0.1.1">
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a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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2 <description>the optimal scoring subnetwork</description>
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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3 <requirements>
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bb873b309fce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit 392f981f8dd08fb4b98526cba17074736ff15b38"
iuc
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4 <requirement type="package" version="2.42.3">graphviz</requirement>
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a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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5 <requirement type="package" version="0.4.10">py-graphviz</requirement>
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bb873b309fce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit 392f981f8dd08fb4b98526cba17074736ff15b38"
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6 <requirement type="package" version="1">fonts-conda-ecosystem</requirement>
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a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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7 </requirements>
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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8 <command detect_errors="aggressive"><![CDATA[
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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9 python '$__tool_directory__/visualization.py' -i '$subnetwork' -o $visualization
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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10 ]]></command>
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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11 <inputs>
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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12 <param type="data" name="subnetwork" format="txt" label="Heinz output file"
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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13 help='Output file of the tool "Identify optimal scoring subnetwork"'/>
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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14 </inputs>
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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15 <outputs>
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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16 <data name="visualization" format="pdf" label="${tool.name} on ${on_string}: Heinz visualization" />
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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17 </outputs>
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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18 <tests>
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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19 <test>
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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20 <param name="subnetwork" value="Heinz_output.txt" />
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bb873b309fce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit 392f981f8dd08fb4b98526cba17074736ff15b38"
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21 <output name="visualization" file="heinz_graph.pdf" compare="sim_size" delta="10000" />
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a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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22 </test>
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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23 </tests>
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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24 <help><![CDATA[
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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25 This tool provides a simple visualisation of the raw output of the Heinz Galaxy tool
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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26 and saves the output as PDF.
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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27
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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28 Heinz output file: output file of the tool "Identify optimal scoring subnetwork".
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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29 ]]></help>
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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30 <citations>
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31 <citation type="doi">10.1093/bioinformatics/btn161</citation>
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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32 <citation type="doi">10.1093/bioinformatics/btg148</citation>
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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33 </citations>
a365150d73c0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
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34 </tool>