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comparison visualization.xml @ 2:bb873b309fce draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit 392f981f8dd08fb4b98526cba17074736ff15b38"
author iuc
date Thu, 23 Jan 2020 19:07:29 +0000
parents a365150d73c0
children
comparison
equal deleted inserted replaced
1:3d76702452e1 2:bb873b309fce
1 <tool id="heinz_visualization" name="Visualize" version="0.1.0"> 1 <tool id="heinz_visualization" name="Visualize" version="0.1.1">
2 <description>the optimal scoring subnetwork</description> 2 <description>the optimal scoring subnetwork</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="2.38.0">graphviz</requirement> 4 <requirement type="package" version="2.42.3">graphviz</requirement>
5 <requirement type="package" version="0.4.10">py-graphviz</requirement> 5 <requirement type="package" version="0.4.10">py-graphviz</requirement>
6 <requirement type="package" version="1">fonts-conda-ecosystem</requirement>
6 </requirements> 7 </requirements>
7 <command detect_errors="aggressive"><![CDATA[ 8 <command detect_errors="aggressive"><![CDATA[
8 python '$__tool_directory__/visualization.py' -i '$subnetwork' -o $visualization 9 python '$__tool_directory__/visualization.py' -i '$subnetwork' -o $visualization
9 ]]></command> 10 ]]></command>
10 <inputs> 11 <inputs>
15 <data name="visualization" format="pdf" label="${tool.name} on ${on_string}: Heinz visualization" /> 16 <data name="visualization" format="pdf" label="${tool.name} on ${on_string}: Heinz visualization" />
16 </outputs> 17 </outputs>
17 <tests> 18 <tests>
18 <test> 19 <test>
19 <param name="subnetwork" value="Heinz_output.txt" /> 20 <param name="subnetwork" value="Heinz_output.txt" />
20 <output name="visualization" file="heinz_graph.pdf" compare="sim_size" delta="2000" /> 21 <output name="visualization" file="heinz_graph.pdf" compare="sim_size" delta="10000" />
21 </test> 22 </test>
22 </tests> 23 </tests>
23 <help><![CDATA[ 24 <help><![CDATA[
24 This tool provides a simple visualisation of the raw output of the Heinz Galaxy tool 25 This tool provides a simple visualisation of the raw output of the Heinz Galaxy tool
25 and saves the output as PDF. 26 and saves the output as PDF.