Mercurial > repos > iuc > funannotate_annotate

comparison funannotate_annotate.xml @ 6:c8eccad1b953 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 2c4f8172c3f452e1119b3d528c97da382750adeb
author iuc
date Tue, 25 Apr 2023 18:24:17 +0000
parents cb06fd12e746
children f6482e570d32
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5:9474ef36a87b 6:c8eccad1b953
6 <requirements> 6 <requirements>
7 <expand macro="requirements" /> 7 <expand macro="requirements" />
8 </requirements> 8 </requirements>
9 <version_command>funannotate check --show-versions</version_command> 9 <version_command>funannotate check --show-versions</version_command>
10 <command><![CDATA[ 10 <command><![CDATA[
11 ## Needed by some subprocess invoked internally
12 ## https://github.com/nextgenusfs/funannotate/issues/905
13 export FUNANNOTATE_DB='$database.fields.path'
14
15 &&
16
11 funannotate annotate 17 funannotate annotate
12 18
13 #if $input.input_type == 'gbk' 19 #if $input.input_type == 'gbk'
14 --genbank '${input.genbank}' 20 --genbank '${input.genbank}'
15 #else 21 #else