Mercurial > repos > iuc > enasearch_retrieve_data

annotate enasearch_retrieve_data.xml @ 0:ec65a2a93d57 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
author iuc
date Tue, 29 Aug 2017 04:10:18 -0400
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children ac35ab2b3915
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ec65a2a93d57 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
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1 <tool id="enasearch_retrieve_data" name="Retrieve ENA data" version="@WRAPPER_VERSION@.0">
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2 <description>(other than taxon and project)</description>
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3 <macros>
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4 <import>macros.xml</import>
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5 <import>search_macros.xml</import>
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6 </macros>
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7 <expand macro="requirements"/>
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8 <expand macro="version"/>
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9 <command detect_errors="aggressive"><![CDATA[
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10 enasearch
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11 retrieve_data
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12 @IDS@
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13 @DISPLAY@
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14 $expanded
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15 $header
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16 --file '$output'
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17 --download 'txt'
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18 ]]></command>
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19 <inputs>
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20 <param argument="--ids" type="text" multiple="true" label="Ids for records to return" help="Other than Taxon and Project. It can also be range of ids (e.g. ERA000010-ERA000020)"/>
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21 <expand macro="display_opt"/>
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22 <expand macro="expanded"/>
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23 <expand macro="header"/>
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24 </inputs>
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25 <outputs>
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26 <data name="output" format="tabular" label="${tool.name} on ${ids}">
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27 <expand macro="change_format"/>
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28 </data>
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29 </outputs>
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30 <tests>
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31 <test>
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32 <param name="ids" value="ERA000010-ERA000020"/>
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33 <conditional name="display_opt">
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34 <param name="display" value="xml"/>
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35 </conditional>
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36 <output name="output" ftype="xml" md5="d42dec30c41578705ba9b167dc0c30b1"/>
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37 </test>
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38 <test>
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39 <param name="ids" value="A00145"/>
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40 <conditional name="display_opt">
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41 <param name="display" value="fasta"/>
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42 <param name="range_start" value="3"/>
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43 <param name="range_stop" value="63"/>
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44 </conditional>
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45 <output name="output" ftype="fasta" md5="758cb77161dcf6f8cf841cb141e9277e"/>
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46 </test>
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47 <test>
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48 <param name="ids" value="AL513382"/>
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49 <conditional name="display_opt">
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50 <param name="display" value="text"/>
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51 <param name="offset" value="0"/>
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52 <param name="length" value="100"/>
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53 </conditional>
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54 <param name="expanded" value="true"/>
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55 <output name="output" md5="e77ed0fb6f75093251b6ddc98f9db835"/>
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56 </test>
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57 <test>
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58 <param name="ids" value="PRJEB2772,AL513382"/>
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59 <conditional name="display_opt">
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60 <param name="display" value="html"/>
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61 </conditional>
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62 <param name="header" value="true"/>
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63 <output name="output" md5="7b23a8c12893728272f4993073e341f6"/>
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64 </test>
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65 </tests>
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66 <help><![CDATA[
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67 **What it does**
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68
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69 This tool retrieve ENA data (other than taxon and project)
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70 ]]></help>
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71 <expand macro="citations"/>
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72 </tool>