Mercurial > repos > iuc > enasearch_retrieve_data

comparison enasearch_retrieve_data.xml @ 0:ec65a2a93d57 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
author iuc
date Tue, 29 Aug 2017 04:10:18 -0400
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children ac35ab2b3915
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-1:000000000000 0:ec65a2a93d57
1 <tool id="enasearch_retrieve_data" name="Retrieve ENA data" version="@WRAPPER_VERSION@.0">
2 <description>(other than taxon and project)</description>
3 <macros>
4 <import>macros.xml</import>
5 <import>search_macros.xml</import>
6 </macros>
7 <expand macro="requirements"/>
8 <expand macro="version"/>
9 <command detect_errors="aggressive"><![CDATA[
10 enasearch
11 retrieve_data
12 @IDS@
13 @DISPLAY@
14 $expanded
15 $header
16 --file '$output'
17 --download 'txt'
18 ]]></command>
19 <inputs>
20 <param argument="--ids" type="text" multiple="true" label="Ids for records to return" help="Other than Taxon and Project. It can also be range of ids (e.g. ERA000010-ERA000020)"/>
21 <expand macro="display_opt"/>
22 <expand macro="expanded"/>
23 <expand macro="header"/>
24 </inputs>
25 <outputs>
26 <data name="output" format="tabular" label="${tool.name} on ${ids}">
27 <expand macro="change_format"/>
28 </data>
29 </outputs>
30 <tests>
31 <test>
32 <param name="ids" value="ERA000010-ERA000020"/>
33 <conditional name="display_opt">
34 <param name="display" value="xml"/>
35 </conditional>
36 <output name="output" ftype="xml" md5="d42dec30c41578705ba9b167dc0c30b1"/>
37 </test>
38 <test>
39 <param name="ids" value="A00145"/>
40 <conditional name="display_opt">
41 <param name="display" value="fasta"/>
42 <param name="range_start" value="3"/>
43 <param name="range_stop" value="63"/>
44 </conditional>
45 <output name="output" ftype="fasta" md5="758cb77161dcf6f8cf841cb141e9277e"/>
46 </test>
47 <test>
48 <param name="ids" value="AL513382"/>
49 <conditional name="display_opt">
50 <param name="display" value="text"/>
51 <param name="offset" value="0"/>
52 <param name="length" value="100"/>
53 </conditional>
54 <param name="expanded" value="true"/>
55 <output name="output" md5="e77ed0fb6f75093251b6ddc98f9db835"/>
56 </test>
57 <test>
58 <param name="ids" value="PRJEB2772,AL513382"/>
59 <conditional name="display_opt">
60 <param name="display" value="html"/>
61 </conditional>
62 <param name="header" value="true"/>
63 <output name="output" md5="7b23a8c12893728272f4993073e341f6"/>
64 </test>
65 </tests>
66 <help><![CDATA[
67 **What it does**
68
69 This tool retrieve ENA data (other than taxon and project)
70 ]]></help>
71 <expand macro="citations"/>
72 </tool>