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view data_manager_conf.xml @ 2:c5f5ec715548 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
author iuc
date Fri, 21 Apr 2017 12:38:10 -0400
parents cc25c735cae1
children 613b120db55c
line wrap: on
line source

<?xml version="1.0"?>
<data_managers>
    <data_manager tool_file="data_manager/rna_star_index_builder.xml" id="rna_star_index_builder" version="0.0.3">
        <data_table name="rnastar_index2">
            <output>
                <column name="value" />
                <column name="dbkey" />
                <column name="name" />
                <column name="path" output_ref="out_file" >
                    <move type="directory" relativize_symlinks="True">
                        <!-- <source>${path}</source>
                            out_file.extra_files_path is used as base by default
                            if no source, eg for type=directory, then refers to base 
                        -->
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/rnastar_index2/${value}</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/rnastar_index2/${value}/${path}</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
                <column name="withGTF" />
            </output>
        </data_table>
    </data_manager>
</data_managers>