Mercurial > repos > iuc > data_manager_star_index_builder

comparison data_manager_conf.xml @ 2:c5f5ec715548 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
author iuc
date Fri, 21 Apr 2017 12:38:10 -0400
parents cc25c735cae1
children 613b120db55c
comparison
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1:2110e4aa3db3 2:c5f5ec715548
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <data_managers> 2 <data_managers>
3 3 <data_manager tool_file="data_manager/rna_star_index_builder.xml" id="rna_star_index_builder" version="0.0.3">
4 <data_manager tool_file="data_manager/rnastar_index_builder.xml" id="rnastar_index_builder" version="0.0.1"> 4 <data_table name="rnastar_index2">
5 <data_table name="rnastar_index">
6 <output> 5 <output>
7 <column name="value" /> 6 <column name="value" />
8 <column name="dbkey" /> 7 <column name="dbkey" />
9 <column name="name" /> 8 <column name="name" />
10 <column name="path" output_ref="out_file" > 9 <column name="path" output_ref="out_file" >
11 <move type="directory" relativize_symlinks="True"> 10 <move type="directory" relativize_symlinks="True">
12 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base --> 11 <!-- <source>${path}</source>
13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/rnastar_index/${value}</target> 12 out_file.extra_files_path is used as base by default
13 if no source, eg for type=directory, then refers to base
14 -->
15 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/rnastar_index2/${value}</target>
14 </move> 16 </move>
15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/rnastar_index/${value}/${path}</value_translation> 17 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/rnastar_index2/${value}/${path}</value_translation>
16 <value_translation type="function">abspath</value_translation> 18 <value_translation type="function">abspath</value_translation>
17 </column> 19 </column>
20 <column name="withGTF" />
18 </output> 21 </output>
19 </data_table> 22 </data_table>
20 </data_manager> 23 </data_manager>
21
22 </data_managers> 24 </data_managers>