Mercurial > repos > iuc > data_manager_star_index_builder

diff data_manager_conf.xml @ 2:c5f5ec715548 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
author iuc
date Fri, 21 Apr 2017 12:38:10 -0400
parents cc25c735cae1
children 613b120db55c
line wrap: on
line diff
--- a/data_manager_conf.xml	Tue Apr 04 17:54:35 2017 -0400
+++ b/data_manager_conf.xml	Fri Apr 21 12:38:10 2017 -0400
@@ -1,22 +1,24 @@
 <?xml version="1.0"?>
 <data_managers>
-    
-    <data_manager tool_file="data_manager/rnastar_index_builder.xml" id="rnastar_index_builder" version="0.0.1">
-        <data_table name="rnastar_index">
+    <data_manager tool_file="data_manager/rna_star_index_builder.xml" id="rna_star_index_builder" version="0.0.3">
+        <data_table name="rnastar_index2">
             <output>
                 <column name="value" />
                 <column name="dbkey" />
                 <column name="name" />
                 <column name="path" output_ref="out_file" >
                     <move type="directory" relativize_symlinks="True">
-                        <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
-                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/rnastar_index/${value}</target>
+                        <!-- <source>${path}</source>
+                            out_file.extra_files_path is used as base by default
+                            if no source, eg for type=directory, then refers to base 
+                        -->
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/rnastar_index2/${value}</target>
                     </move>
-                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/rnastar_index/${value}/${path}</value_translation>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/rnastar_index2/${value}/${path}</value_translation>
                     <value_translation type="function">abspath</value_translation>
                 </column>
+                <column name="withGTF" />
             </output>
         </data_table>
     </data_manager>
-    
 </data_managers>