Mercurial > repos > iracooke > tpp_prophets

annotate protxml_to_table.xml @ 17:b68f292b2904 draft

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author simonalpha
date Mon, 05 Jan 2015 05:37:56 -0500
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17
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1 <tool id="protxml_to_table_1" name="ProtXML to Table" version="1.0.1">
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2 <requirements>
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3 <container type="docker">simonalpha/protk:1.4.0</container>
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4 <requirement type="package" version="1.3">protk</requirement>
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5 </requirements>
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6
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7 <description>Converts a ProtXML file to a table</description>
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8
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9 <command>
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10 protxml_to_table.rb
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11 $invert_probs
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12
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13 $input_file
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14 -o $output
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15 </command>
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17 <inputs>
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19 <param format="protxml" name="input_file" type="data" label="ProtXML File to Convert"/>
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20 <param name="invert_probs" type="boolean" label="Print inverted probabilities (ie 1-p instead of p)" truevalue="--invert-probabilities" falsevalue=""/>
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21 </inputs>
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22
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23
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24 <outputs>
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25 <data format="tabular" name="output" />
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26 </outputs>
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27
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28
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29 <help>
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30
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31 **What it does**
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32
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33 Converts a ProtXML file to a tab separated table
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34
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35 </help>
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36
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37 </tool>