--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/protxml_to_table.xml	Mon Jan 05 05:37:56 2015 -0500
@@ -0,0 +1,37 @@
+<tool id="protxml_to_table_1" name="ProtXML to Table" version="1.0.1">
+	<requirements>
+            <container type="docker">simonalpha/protk:1.4.0</container>
+	    <requirement type="package" version="1.3">protk</requirement>
+   </requirements>
+
+	<description>Converts a ProtXML file to a table</description>
+
+	<command>
+		protxml_to_table.rb 
+	  	$invert_probs
+
+		$input_file 
+		-o $output 
+	</command>
+
+	<inputs>	
+		
+		<param format="protxml" name="input_file" type="data" label="ProtXML File to Convert"/>
+	    <param name="invert_probs" type="boolean" label="Print inverted probabilities (ie 1-p instead of p)" truevalue="--invert-probabilities" falsevalue=""/>
+	</inputs>
+
+
+	<outputs>
+		<data format="tabular" name="output" />
+	</outputs>
+
+
+  <help>
+
+**What it does**
+
+Converts a ProtXML file to a tab separated table 
+
+  </help>
+
+</tool>