Mercurial > repos > greg > plant_tribes_add_scaffold

changeset 7:82822d1e5119 draft

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Uploaded
author greg
date Tue, 22 May 2018 10:15:49 -0400
parents 7973201f23e7
children 9b2ede3e7100
files add_scaffold.py
diffstat 1 files changed, 3 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/add_scaffold.py	Tue May 22 10:10:15 2018 -0400
+++ b/add_scaffold.py	Tue May 22 10:15:49 2018 -0400
@@ -75,7 +75,7 @@
         cur.execute(sql)
         try:
             cur.fetchone()[0]
-            self.stop_err("The scaffold %s has already been added to the database." % scaffold_id)
+            # The scaffold has been added to the database.
             return False
         except:
             # The scaffold has not yet been added.
@@ -88,6 +88,8 @@
             self.process_orthogroup_fasta_files()
             self.fh.flush()
             self.fh.close()
+        else:
+            self.stop_err("The scaffold %s has already been added to the database." % scaffold_id)
 
     def process_annot_dir(self):
         """