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5
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1 Using default read distribution.
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2 Providing your own read distribution file is highly recommended. Use --d option.
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3
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4 Processing HitLoaders for: Abf1 1
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5 Loading from IDX hit loader: /Users/gvk/work/git_workspace/galaxy/database/files/003/dataset_3093.dat
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6 Estimating scaling ratio for Abf1:1
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7 Loaded experiments:
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8 Condition Abf1: #Replicates: 1
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9 Condition Abf1: Rep Abf1:1
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10 Signal: 0.0
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11 Finding potential binding regions.
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12 PotentialRegionFilter: genomic threshold for Abf1:1 with bin width 368 = 1
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13 0 potential regions found.
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14 Initialzing mixture model
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15 Caching sequences
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16 Caching completed
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17 Alpha Abf1 Range=368 1.0
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18 Global noise per base initialization for Abf1 = 0.0000
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19 Multi-condition positional priors: A given B:-0.1520 A given notB:-Infinity
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20
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21 ============================ Round 0 ============================
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22 Updated Abf1:1 read distribution from 0 binding events.
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23 Alpha Abf1 Range=662 1.0
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24 MEME ExitValue: 1
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25 Abf1 NOMOTIF
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26
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27 ============================ Round 1 ============================
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28 Updated Abf1:1 read distribution from 0 binding events.
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29 Alpha Abf1 Range=762 1.0
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30 MEME ExitValue: 1
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31 Abf1 NOMOTIF
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32
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33 ============================ Round 2 ============================
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34 Refined Abf1:1 read distribution from 0 binding events.
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35 Alpha Abf1 Range=762 1.0
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36 MEME ExitValue: 1
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37 Abf1 NOMOTIF
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38
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39 ============================ ML read assignment ============================
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40 Abf1:1 0 signal-noise ratio: NaN
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41 ML read assignment finished.
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42
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43 ============================= Post-processing ==============================
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44 Binding event detection finished!
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45 Binding events are printed to files in /Users/gvk/work/git_workspace/galaxy/database/job_working_directory/002/2194/dataset_3100_files beginning with: /Users/gvk/work/git_workspace/galaxy/database/job_working_directory/002/2194/dataset_3100_files
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46 Events post-analysis
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47 Peak-motif distance histograms
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48 Peak-peak distance histograms (same condition)
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49 Writing results report to: /Users/gvk/work/git_workspace/galaxy/database/job_working_directory/002/2194/dataset_3100_files/multiGPS_dataset_3100_files_results.html
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