Mercurial > repos > greg > meme_fimo

changeset 1:a64feed0d508 draft

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Uploaded
author greg
date Thu, 14 Apr 2016 09:47:22 -0400
parents 09098f34f445
children 97fb2d36c482
files fimo_wrapper.py
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/fimo_wrapper.py	Wed Mar 23 13:58:55 2016 -0400
+++ b/fimo_wrapper.py	Thu Apr 14 09:47:22 2016 -0400
@@ -130,7 +130,7 @@
         stop_err(stderr)
     # Sort by chromosome id, identifying and eliminating identical
     # motif occurrences.
-    cmd = 'sort -k1,1 -u -o %s %s' % (gff_file, gff_file)
+    cmd = 'sort -k1,1 -o %s %s' % (gff_file, gff_file)
     proc = subprocess.Popen(args=cmd, stderr=tmp_stderr, shell=True)
     returncode = proc.wait()
     if returncode != 0: