# HG changeset patch
# User greg
# Date 1460641642 14400
# Node ID a64feed0d508d4711e1dc0257ee334a01fda876e
# Parent  09098f34f445a98f04ca8af0a60fa7591c22315e
Uploaded

diff -r 09098f34f445 -r a64feed0d508 fimo_wrapper.py
--- a/fimo_wrapper.py	Wed Mar 23 13:58:55 2016 -0400
+++ b/fimo_wrapper.py	Thu Apr 14 09:47:22 2016 -0400
@@ -130,7 +130,7 @@
         stop_err(stderr)
     # Sort by chromosome id, identifying and eliminating identical
     # motif occurrences.
-    cmd = 'sort -k1,1 -u -o %s %s' % (gff_file, gff_file)
+    cmd = 'sort -k1,1 -o %s %s' % (gff_file, gff_file)
     proc = subprocess.Popen(args=cmd, stderr=tmp_stderr, shell=True)
     returncode = proc.wait()
     if returncode != 0: