Mercurial > repos > greg > ideas
changeset 47:3a4697f71a05 draft
Uploaded
| author | greg |
|---|---|
| date | Wed, 23 Aug 2017 09:20:45 -0400 |
| parents | f93c1cfb9e0a |
| children | c9c90bfbeb20 |
| files | ideas.xml |
| diffstat | 1 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/ideas.xml Wed Aug 23 09:14:21 2017 -0400 +++ b/ideas.xml Wed Aug 23 09:20:45 2017 -0400 @@ -78,7 +78,9 @@ $tmp_dir/*.bed #end if $hp -$log2 +#if str($log2) != '0.0': + -log2 $log2 +#end if #if str($max_states) != '0.0': -G $max_states #end if @@ -167,7 +169,7 @@ <param name="blacklist_input" type="data" format="bed" optional="True" multiple="True" label="Select file(s) containing regions to exclude"/> <param argument="-norm" type="boolean" truevalue="-norm" falsevalue="" checked="False" label="Standardize all datasets"/> <param argument="-hp" type="boolean" truevalue="-hp" falsevalue="" checked="False" label="Discourage state transition across chromosomes"/> - <param argument="-log2" type="float" value="0" min="0" label="Use log2(x+number) transformation" help="Zero value has no affect"/> + <param name="log2" type="float" value="0" min="0" label="Use log2(x+number) transformation" help="Zero value has no affect"/> <param name="max_states" type="float" value="0" min="0" label="Maximum number of states to be inferred" help="Zero value has no affect"/> <param name="initial_states" type="integer" value="20" min="0" label="Initial number of states" help="Zero value has no affect"/> <param name="max_position_classes" type="integer" value="0" min="0" label="Maximum number of position classes to be inferred" help="Zero value has no affect"/>