# HG changeset patch
# User greg
# Date 1503494445 14400
# Node ID 3a4697f71a05262dc12df527f23396a85001c825
# Parent  f93c1cfb9e0a23a6aed0ee443b0920209076db39
Uploaded

diff -r f93c1cfb9e0a -r 3a4697f71a05 ideas.xml
--- a/ideas.xml	Wed Aug 23 09:14:21 2017 -0400
+++ b/ideas.xml	Wed Aug 23 09:20:45 2017 -0400
@@ -78,7 +78,9 @@
     $tmp_dir/*.bed
 #end if
 $hp
-$log2
+#if str($log2) != '0.0':
+    -log2 $log2
+#end if
 #if str($max_states) != '0.0':
     -G $max_states
 #end if
@@ -167,7 +169,7 @@
         <param name="blacklist_input" type="data" format="bed" optional="True" multiple="True" label="Select file(s) containing regions to exclude"/>
         <param argument="-norm" type="boolean" truevalue="-norm" falsevalue="" checked="False" label="Standardize all datasets"/>
         <param argument="-hp" type="boolean" truevalue="-hp" falsevalue="" checked="False" label="Discourage state transition across chromosomes"/>
-        <param argument="-log2" type="float" value="0" min="0" label="Use log2(x+number) transformation" help="Zero value has no affect"/>
+        <param name="log2" type="float" value="0" min="0" label="Use log2(x+number) transformation" help="Zero value has no affect"/>
         <param name="max_states" type="float" value="0" min="0" label="Maximum number of states to be inferred" help="Zero value has no affect"/>
         <param name="initial_states" type="integer" value="20" min="0" label="Initial number of states" help="Zero value has no affect"/>
         <param name="max_position_classes" type="integer" value="0" min="0" label="Maximum number of position classes to be inferred" help="Zero value has no affect"/>