Mercurial > repos > greg > genotype_population_info

changeset 4:5923e3420a04 draft

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Uploaded
author greg
date Fri, 09 Nov 2018 14:12:40 -0500
parents 535bb27f798f
children 47edf67ae650
files genotype_population_info.py
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/genotype_population_info.py	Fri Nov 09 14:11:39 2018 -0500
+++ b/genotype_population_info.py	Fri Nov 09 14:12:40 2018 -0500
@@ -10,7 +10,7 @@
 parser.add_argument('--input_csv', dest='input_csv', help='Affymetrix 96 well plate file')
 parser.add_argument('--input_vcf', dest='input_vcf', help='Input VCF file')
 parser.add_argument('--output', dest='output', help='Output dataset'),
-self.args = parser.parse_args()
+args = parser.parse_args()
 
 # Parse the input_vcf file, looking for the first line
 # that starts with the string "#CHROM"
@@ -46,6 +46,6 @@
 
 # The output file will consist of columns:
 # Item #, Sample ID, Region
-with open(self.args.output, "w") as outfh:
+with open(args.output, "w") as outfh:
     for i, sample_id in sample_list:
         outfh.write("%d\t%s\t%s\n" % (i, sample_id, region_list[1]))