# HG changeset patch
# User greg
# Date 1541790760 18000
# Node ID 5923e3420a048ebb249ed8e9487121914141fa36
# Parent  535bb27f798f684d51d8a5cb1e2abc80604dc510
Uploaded

diff -r 535bb27f798f -r 5923e3420a04 genotype_population_info.py
--- a/genotype_population_info.py	Fri Nov 09 14:11:39 2018 -0500
+++ b/genotype_population_info.py	Fri Nov 09 14:12:40 2018 -0500
@@ -10,7 +10,7 @@
 parser.add_argument('--input_csv', dest='input_csv', help='Affymetrix 96 well plate file')
 parser.add_argument('--input_vcf', dest='input_vcf', help='Input VCF file')
 parser.add_argument('--output', dest='output', help='Output dataset'),
-self.args = parser.parse_args()
+args = parser.parse_args()
 
 # Parse the input_vcf file, looking for the first line
 # that starts with the string "#CHROM"
@@ -46,6 +46,6 @@
 
 # The output file will consist of columns:
 # Item #, Sample ID, Region
-with open(self.args.output, "w") as outfh:
+with open(args.output, "w") as outfh:
     for i, sample_id in sample_list:
         outfh.write("%d\t%s\t%s\n" % (i, sample_id, region_list[1]))