Mercurial > repos > greg > gene_family_classifier

changeset 66:7525307aa1d7 draft

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Uploaded
author greg
date Thu, 09 Feb 2017 13:37:40 -0500
parents 774c1ad296e7
children 062883e3392c
files gene_family_classifier.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/gene_family_classifier.xml	Thu Feb 09 13:04:32 2017 -0500
+++ b/gene_family_classifier.xml	Thu Feb 09 13:37:40 2017 -0500
@@ -106,10 +106,10 @@
 
             #if $create_ortho_sequences:
                 #if $create_corresponding_coding_sequences:
-                    && echo "#Size\tName" > $output_ptorthocs
+                    && echo -e "#Size\tName" > $output_ptorthocs
                     && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_ptorthocs
                 #else:
-                    && echo "#Size\tName" > $output_ptortho
+                    && echo -e "#Size\tName" > $output_ptortho
                     && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_ptortho
                 #end if
                 && mv $orthogroups_fasta_src_dir/* $orthogroups_fasta_dest_dir
@@ -117,7 +117,7 @@
 
             #if $single_copy_orthogroup:
                 #if $create_ortho_sequences:
-                    && echo "#Size\tName" > $output_ptsco
+                    && echo -e "#Size\tName" > $output_ptsco
                     && ls -l $single_copy_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_ptsco
                     && mv $single_copy_fasta_src_dir/* $single_copy_fasta_dest_dir
                 #end if