Mercurial > repos > greg > gene_family_classifier

changeset 61:43d6e752f181 draft

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Uploaded
author greg
date Thu, 09 Feb 2017 10:51:00 -0500
parents 2a9396e4fdbe
children ffaedadf9c18
files gene_family_classifier.xml
diffstat 1 files changed, 0 insertions(+), 12 deletions(-) [+]
line wrap: on
line diff
--- a/gene_family_classifier.xml	Thu Feb 09 10:46:29 2017 -0500
+++ b/gene_family_classifier.xml	Thu Feb 09 10:51:00 2017 -0500
@@ -106,12 +106,6 @@
             #end if
 
             #if $create_ortho_sequences:
-                #while True:
-                    #if $os.path.exists($orthogroups_fasta_src_dir):
-                        #break
-                    #end if
-                    $time.sleep(5)
-                #end while
                 #if len($os.listdir($orthogroups_fasta_src_dir)) > 0:
                     #if $create_corresponding_coding_sequences:
                         && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptcgfcs
@@ -124,12 +118,6 @@
 
             #if $single_copy_orthogroup:
                 #if $create_ortho_sequences:
-                    #while True:
-                        #if $os.path.exists($single_copy_fasta_src_dir):
-                            #break
-                        #end if
-                        $time.sleep(5)
-                    #end while
                     #if len($os.listdir($single_copy_fasta_src_dir)) > 0:
                         && ls -l $single_copy_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptsco
                         && mv $single_copy_fasta_src_dir/* $single_copy_fasta_dest_dir