# HG changeset patch
# User greg
# Date 1486655460 18000
# Node ID 43d6e752f1817c9500925e25fb0ec55fae997f27
# Parent  2a9396e4fdbed4bd4f242a684c2f15ea6e89512a
Uploaded

diff -r 2a9396e4fdbe -r 43d6e752f181 gene_family_classifier.xml
--- a/gene_family_classifier.xml	Thu Feb 09 10:46:29 2017 -0500
+++ b/gene_family_classifier.xml	Thu Feb 09 10:51:00 2017 -0500
@@ -106,12 +106,6 @@
             #end if
 
             #if $create_ortho_sequences:
-                #while True:
-                    #if $os.path.exists($orthogroups_fasta_src_dir):
-                        #break
-                    #end if
-                    $time.sleep(5)
-                #end while
                 #if len($os.listdir($orthogroups_fasta_src_dir)) > 0:
                     #if $create_corresponding_coding_sequences:
                         && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptcgfcs
@@ -124,12 +118,6 @@
 
             #if $single_copy_orthogroup:
                 #if $create_ortho_sequences:
-                    #while True:
-                        #if $os.path.exists($single_copy_fasta_src_dir):
-                            #break
-                        #end if
-                        $time.sleep(5)
-                    #end while
                     #if len($os.listdir($single_copy_fasta_src_dir)) > 0:
                         && ls -l $single_copy_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptsco
                         && mv $single_copy_fasta_src_dir/* $single_copy_fasta_dest_dir