Mercurial > repos > greg > fast_fiber_tracking

comparison fast_fiber_tracking.xml @ 2:a695440febc0 draft

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author greg
date Thu, 30 Nov 2017 09:10:39 -0500
parents 25e38b59bc8e
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1:25e38b59bc8e 2:a695440febc0
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.13.0">dipy</requirement> 4 <requirement type="package" version="0.13.0">dipy</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 python '$__tool_directory__/fast_fiber_tracking.py' 7 python '$__tool_directory__/fast_fiber_tracking.py'
8 --drmi_dataset $drmi_dataset 8 --input $input
9 --input_extra_files_path '$input.extra_files_path'
9 --output_csd_direction_field '$output_csd_direction_field' 10 --output_csd_direction_field '$output_csd_direction_field'
10 --output_det_streamlines '$output_det_streamlines' 11 --output_det_streamlines '$output_det_streamlines'
11 --output_fa_map '$output_fa_map' 12 --output_fa_map '$output_fa_map'
13 --output_fa_map_files_path '$output_fa_map.files_path'
12 &>/dev/null 14 &>/dev/null
13 ]]></command> 15 ]]></command>
14 <inputs> 16 <inputs>
15 <param name="drmi_dataset" type="select" label="dRMI dataset"> 17 <param name="input" type="data" format="nifti1" label="dRMI dataset"/>
16 <option value="stanford_hardi" selected="true">stanford_hardi</option>
17 <option value="sherbrooke_3shell">sherbrooke_3shell</option>
18 </param>
19 </inputs> 18 </inputs>
20 <outputs> 19 <outputs>
21 <data name="output_csd_direction_field" format="png" label="${tool.name}: CSD direction field" /> 20 <data name="output_csd_direction_field" format="png" label="${tool.name}: CSD direction field" />
22 <data name="output_det_streamlines" format="png" label="${tool.name}: streamlines" /> 21 <data name="output_det_streamlines" format="png" label="${tool.name}: streamlines" />
23 <data name="output_fa_map" format="nifti1" label="${tool.name}: fractional anisotropic" /> 22 <data name="output_fa_map" format="nifti1" label="${tool.name}: fractional anisotropic" />