Mercurial > repos > greg > fast_fiber_tracking

changeset 2:a695440febc0 draft

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Uploaded
author greg
date Thu, 30 Nov 2017 09:10:39 -0500
parents 25e38b59bc8e
children 63aa79b5ebd6
files fast_fiber_tracking.xml
diffstat 1 files changed, 4 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/fast_fiber_tracking.xml	Wed Nov 29 14:16:03 2017 -0500
+++ b/fast_fiber_tracking.xml	Thu Nov 30 09:10:39 2017 -0500
@@ -5,17 +5,16 @@
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
 python '$__tool_directory__/fast_fiber_tracking.py'
---drmi_dataset $drmi_dataset
+--input $input
+--input_extra_files_path '$input.extra_files_path'
 --output_csd_direction_field '$output_csd_direction_field'
 --output_det_streamlines '$output_det_streamlines'
 --output_fa_map '$output_fa_map'
+--output_fa_map_files_path '$output_fa_map.files_path'
 &>/dev/null
     ]]></command>
     <inputs>
-        <param name="drmi_dataset" type="select" label="dRMI dataset">
-            <option value="stanford_hardi" selected="true">stanford_hardi</option>
-            <option value="sherbrooke_3shell">sherbrooke_3shell</option>
-        </param>
+        <param name="input" type="data" format="nifti1" label="dRMI dataset"/>
     </inputs>
     <outputs>
         <data name="output_csd_direction_field" format="png" label="${tool.name}: CSD direction field" />