Mercurial > repos > greg > extract_genomic_dna

annotate test-data/extract_genomic_dna_out1.fasta @ 14:1a10864abc1f draft

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author greg
date Wed, 02 Mar 2016 09:13:24 -0500
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14
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1 >hg17_chr1_147962192_147962580_-
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2 ACTTGATCCTGCTCCCTCGGTGTCTGCATTGACTCCTCATGCTGGGACTG
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3 GACCCGTCAACCCCCCTGCTCGCTGCTCACGTACCTTCATCACTTTTAGT
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4 GATGATGCAACTTTCGAGGAATGGTTCCCCCAAGGGCGGCCCCCAAAAGT
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5 CCCTGTTCGTGAGGTCTGTCCAGTGACCCATCGTCCAGCCCTATACCGGG
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6 ACCCTGTTACAGACATACCCTATGCCACTGCTCGAGCCTTCAAGATCATT
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7 CGTGAGGCTTACAAGAAGTACATTACTGCCCATGGACTGCCGCCCACTGC
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8 CTCAGCCCTGGGCCCCGGCCCGCCACCTCCTGAGCCCCTCCCTGGCTCTG
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9 GGCCCCGAGCCTTGCGCCAGAAAATTGTCATTAAATGA
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10 >hg17_chr1_147984545_147984630_+
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11 ATGGCGTCGGCCTCCTCCGGGCCGTCGTCTTCGGTCGGTTTTTCATCCTT
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12 TGATCCCGCGGTCCCTTCCTGTACCTTGTCCTCAG
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13 >hg17_chr1_148078400_148078582_-
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14 GTTCTCAGCTTCCTTGCTTCCATGGCTCCAGCACCATTCGAAACCTCAAA
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15 GAGAGGTTCCACATGAGCATGACTGAGGAGCAGCTGCAGCTGCTGGTGGA
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16 GCAGATGGTGGATGGCAGTATGCGGTCTATCACCACCAAACTCTATGACG
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17 GCTTCCAGTACCTCACCAACGGCATCATGTGA
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18 >hg17_chr1_148185136_148185276_+
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19 ATGGAAGCGTTTTTGGGGTCGCGGTCCGGACTTTGGGCGGGGGGTCCGGC
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20 CCCAGGACAGTTTTACCGCATTCCGTCCACTCCCGATTCCTTCATGGATC
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21 CGGCGTCTGCACTTTACAGAGGTCCAATCACGCGGACCCA
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22 >hg17_chr10_55251623_55253124_-
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23 TCTTTTCCTTCTCTACCATTTTCAACAAAGCAGGGGAAATAACTCAGTCT
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24 CAGAAGACAGGAAACATCAACAAGTTGTGATGCCCTTTTCTTCCAATACT
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25 ATTGAGGCTCACAAGTCAGCTCATGTAGACGGATCACTTAAGAGCAACAA
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26 ACTGAAGTCTGCAAGAAAATTCACATTTCTATCTGATGAGGATGACTTAA
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27 GTGCCCATAATCCCCTTTATAAGGAAAACATAAGTCAAGTATCAACAAAT
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28 TCAGACATTTCACAGAGAACAGATTTTGTAGACCCATTTTCACCCAAAAT
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29 ACAAGCCAAGAGTAAGTCTCTGAGGGGCCCAAGAGAAAAGATTCAGAGGC
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30 TGTGGAGTCAGTCAGTCAGCTTACCCAGGAGGCTGATGAGGAAAGTTCCA
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31 AATAGACCAGAGATCATAGATCTGCAGCAGTGGCAAGGCACCAGGCAGAA
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32 AGCTGAAAATGAAAACACTGGAATCTGTACAAACAAAAGAGGTAGCAGCA
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33 ATCCATTGCTTACAACTGAAGAGGCAAATTTGACAGAGAAAGAGGAAATA
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34 AGGCAAGGTGAAACACTGATGATAGAAGGAACAGAACAGTTGAAATCTCT
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35 CTCTTCAGACTCTTCATTTTGCTTTCCCAGGCCTCACTTCTCATTCTCCA
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36 CTTTGCCAACTGTTTCAAGAACTGTGGAACTCAAATCAGAACCTAATGTC
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37 ATCAGTTCTCCTGCTGAGTGTTCCTTGGAACTTTCTCCTTCAAGGCCTTG
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38 TGTTTTACATTCTTCACTCTCTAGGAGAGAGACACCTATTTGTATGTTAC
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39 CTATTGAAACCGAAAGAAATATTTTTGAAAATTTTGCCCATCCACCAAAC
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40 ATCTCTCCTTCTGCCTGtccccttccccctcctcctcctatttctcctcc
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41 ttctcctcctcctgctcctgctcctcttgctcctcctcctgacatttctc
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42 ctttttctcttttttgtcctcctccctctcctccttctatccctcttcct
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43 cttcctcctcctACATTTTTTCCACTTTCCGTTTCAACGTCTGGTCCCCC
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44 AACAccacctcttctacctccatttccaactcctcttcctccaccacctc
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45 cttctattccttgccctccacctccttcAGCTTCATTTCTGTCCACAGAG
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46 TGTGTCTGTATAACAGGTGTTAAATGCACGACCAACTTGATGCCTGCCGA
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47 GAAAATTAAGTCCTCTATGACACAGCTATCAACAACGACAGTGTGTAAAA
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48 CAGACCCTCAGAGAGAACCAAAAGGCATCCTCAGACACGTTAAAAACTTA
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49 GCAGAACTTGAAAAATCAGTAGCTAACATGTACAGTCAAATAGAAAAAAA
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50 CTATCTACGCACAAATGTTTCAGAACTTCAAACTATGTGCCCTTCAGAAG
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51 TAACAAATATGGAAATCACATCTGAACAAAACAAGGGGAGTTTGAACAAT
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52 ATTGTCGAGGGAACTGAAAAACAATCTCACAGTCAATCTACTTCACTGTA
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53 A
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54 >hg17_chr11_116124407_116124501_-
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55 ATCCAATGGATTTGAACAGAAGCGCTTTGCCAGGCTTGCCAGCAAGAAGG
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56 CAGTGGAGGAACTTGCCTACAAATGGAGTGTTGAGGATATGTAA
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57 >hg17_chr11_116206508_116206563_+
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58 ATGCAGCCCCGGGTACTCCTTGTTGTTGCCCTCCTGGCGCTCCTGGCCTC
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59 TGCCC
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60 >hg17_chr11_116211733_116212337_-
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61 CCTAAAGCTCCTTGACAACTGGGACAGCGTGACCTCCACCTTCAGCAAGC
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62 TGCGCGAACAGCTCGGCCCTGTGACCCAGGAGTTCTGGGATAACCTGGAA
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63 AAGGAGACAGAGGGCCTGAGGCAGGAGATGAGCAAGGATCTGGAGGAGGT
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64 GAAGGCCAAGGTGCAGCCCTACCTGGACGACTTCCAGAAGAAGTGGCAGG
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65 AGGAGATGGAGCTCTACCGCCAGAAGGTGGAGCCGCTGCGCGCAGAGCTC
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66 CAAGAGGGCGCGCGCCAGAAGCTGCACGAGCTGCAAGAGAAGCTGAGCCC
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67 ACTGGGCGAGGAGATGCGCGACCGCGCGCGCGCCCATGTGGACGCGCTGC
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68 GCACGCATCTGGCCCCCTACAGCGACGAGCTGCGCCAGCGCTTGGCCGCG
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69 CGCCTTGAGGCTCTCAAGGAGAACGGCGGCGCCAGACTGGCCGAGTACCA
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70 CGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAGCCCG
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71 CGCTCGAGGACCTCCGCCAAGGCCTGCTGCCCGTGCTGGAGAGCTTCAAG
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72 GTCAGCTTCCTGAGCGCTCTCGAGGAGTACACTAAGAAGCTCAACACCCA
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73 GTGA
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74 >hg17_chr11_1812377_1812407_+
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75 ATGCTCCACCTGCATGGCTGGCAAACCATG
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76 >hg17_chr12_38440094_38440321_-
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77 GAGCTTTCTTCCTCTATGCTGGATTTGCTGCTGTGGGACTCCTTTTCATC
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78 TATGGCTGTCTTCCTGAGACCAAAGGCAAAAAATTAGAGGAAATTGAATC
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79 ACTCTTTGACAACAGGCTATGTACATGTGGCACTTCAGATTCTGATGAAG
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80 GGAGATATATTGAATATATTCGGGTAAAGGGAAGTAACTATCATCTTTCT
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81 GACAATGATGCTTCTGATGTGGAATAA
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82 >hg17_chr13_112381694_112381953_+
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83 ATGAACTCACCAGAGGCGAGGCTCTGCGTTGCTCAATGCAGAGACTCTTA
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84 CCCAGGGTGTCAGCCTCTGAAAGATACACGTGCCTGGGCCTCTTCCCTGA
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85 AGATGGACCCGGCAGGTCTGGAGGGAGGCCCCCGTGATGAATCCCGTGAT
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86 GAGCCGCCGATCCGAGCTCAGGCTGCGTCATGGGACCAGCCACAAGGTTG
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87 CCTGACCTATAAAGGTCGCAGGAGTGCCTCAGGGACACAGAAGCAGTTAC
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88 AGCTGCCAG