view test-data/extract_genomic_dna_out1.fasta @ 14:1a10864abc1f draft

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author greg
date Wed, 02 Mar 2016 09:13:24 -0500
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>hg17_chr1_147962192_147962580_-
ACTTGATCCTGCTCCCTCGGTGTCTGCATTGACTCCTCATGCTGGGACTG
GACCCGTCAACCCCCCTGCTCGCTGCTCACGTACCTTCATCACTTTTAGT
GATGATGCAACTTTCGAGGAATGGTTCCCCCAAGGGCGGCCCCCAAAAGT
CCCTGTTCGTGAGGTCTGTCCAGTGACCCATCGTCCAGCCCTATACCGGG
ACCCTGTTACAGACATACCCTATGCCACTGCTCGAGCCTTCAAGATCATT
CGTGAGGCTTACAAGAAGTACATTACTGCCCATGGACTGCCGCCCACTGC
CTCAGCCCTGGGCCCCGGCCCGCCACCTCCTGAGCCCCTCCCTGGCTCTG
GGCCCCGAGCCTTGCGCCAGAAAATTGTCATTAAATGA
>hg17_chr1_147984545_147984630_+
ATGGCGTCGGCCTCCTCCGGGCCGTCGTCTTCGGTCGGTTTTTCATCCTT
TGATCCCGCGGTCCCTTCCTGTACCTTGTCCTCAG
>hg17_chr1_148078400_148078582_-
GTTCTCAGCTTCCTTGCTTCCATGGCTCCAGCACCATTCGAAACCTCAAA
GAGAGGTTCCACATGAGCATGACTGAGGAGCAGCTGCAGCTGCTGGTGGA
GCAGATGGTGGATGGCAGTATGCGGTCTATCACCACCAAACTCTATGACG
GCTTCCAGTACCTCACCAACGGCATCATGTGA
>hg17_chr1_148185136_148185276_+
ATGGAAGCGTTTTTGGGGTCGCGGTCCGGACTTTGGGCGGGGGGTCCGGC
CCCAGGACAGTTTTACCGCATTCCGTCCACTCCCGATTCCTTCATGGATC
CGGCGTCTGCACTTTACAGAGGTCCAATCACGCGGACCCA
>hg17_chr10_55251623_55253124_-
TCTTTTCCTTCTCTACCATTTTCAACAAAGCAGGGGAAATAACTCAGTCT
CAGAAGACAGGAAACATCAACAAGTTGTGATGCCCTTTTCTTCCAATACT
ATTGAGGCTCACAAGTCAGCTCATGTAGACGGATCACTTAAGAGCAACAA
ACTGAAGTCTGCAAGAAAATTCACATTTCTATCTGATGAGGATGACTTAA
GTGCCCATAATCCCCTTTATAAGGAAAACATAAGTCAAGTATCAACAAAT
TCAGACATTTCACAGAGAACAGATTTTGTAGACCCATTTTCACCCAAAAT
ACAAGCCAAGAGTAAGTCTCTGAGGGGCCCAAGAGAAAAGATTCAGAGGC
TGTGGAGTCAGTCAGTCAGCTTACCCAGGAGGCTGATGAGGAAAGTTCCA
AATAGACCAGAGATCATAGATCTGCAGCAGTGGCAAGGCACCAGGCAGAA
AGCTGAAAATGAAAACACTGGAATCTGTACAAACAAAAGAGGTAGCAGCA
ATCCATTGCTTACAACTGAAGAGGCAAATTTGACAGAGAAAGAGGAAATA
AGGCAAGGTGAAACACTGATGATAGAAGGAACAGAACAGTTGAAATCTCT
CTCTTCAGACTCTTCATTTTGCTTTCCCAGGCCTCACTTCTCATTCTCCA
CTTTGCCAACTGTTTCAAGAACTGTGGAACTCAAATCAGAACCTAATGTC
ATCAGTTCTCCTGCTGAGTGTTCCTTGGAACTTTCTCCTTCAAGGCCTTG
TGTTTTACATTCTTCACTCTCTAGGAGAGAGACACCTATTTGTATGTTAC
CTATTGAAACCGAAAGAAATATTTTTGAAAATTTTGCCCATCCACCAAAC
ATCTCTCCTTCTGCCTGtccccttccccctcctcctcctatttctcctcc
ttctcctcctcctgctcctgctcctcttgctcctcctcctgacatttctc
ctttttctcttttttgtcctcctccctctcctccttctatccctcttcct
cttcctcctcctACATTTTTTCCACTTTCCGTTTCAACGTCTGGTCCCCC
AACAccacctcttctacctccatttccaactcctcttcctccaccacctc
cttctattccttgccctccacctccttcAGCTTCATTTCTGTCCACAGAG
TGTGTCTGTATAACAGGTGTTAAATGCACGACCAACTTGATGCCTGCCGA
GAAAATTAAGTCCTCTATGACACAGCTATCAACAACGACAGTGTGTAAAA
CAGACCCTCAGAGAGAACCAAAAGGCATCCTCAGACACGTTAAAAACTTA
GCAGAACTTGAAAAATCAGTAGCTAACATGTACAGTCAAATAGAAAAAAA
CTATCTACGCACAAATGTTTCAGAACTTCAAACTATGTGCCCTTCAGAAG
TAACAAATATGGAAATCACATCTGAACAAAACAAGGGGAGTTTGAACAAT
ATTGTCGAGGGAACTGAAAAACAATCTCACAGTCAATCTACTTCACTGTA
A
>hg17_chr11_116124407_116124501_-
ATCCAATGGATTTGAACAGAAGCGCTTTGCCAGGCTTGCCAGCAAGAAGG
CAGTGGAGGAACTTGCCTACAAATGGAGTGTTGAGGATATGTAA
>hg17_chr11_116206508_116206563_+
ATGCAGCCCCGGGTACTCCTTGTTGTTGCCCTCCTGGCGCTCCTGGCCTC
TGCCC
>hg17_chr11_116211733_116212337_-
CCTAAAGCTCCTTGACAACTGGGACAGCGTGACCTCCACCTTCAGCAAGC
TGCGCGAACAGCTCGGCCCTGTGACCCAGGAGTTCTGGGATAACCTGGAA
AAGGAGACAGAGGGCCTGAGGCAGGAGATGAGCAAGGATCTGGAGGAGGT
GAAGGCCAAGGTGCAGCCCTACCTGGACGACTTCCAGAAGAAGTGGCAGG
AGGAGATGGAGCTCTACCGCCAGAAGGTGGAGCCGCTGCGCGCAGAGCTC
CAAGAGGGCGCGCGCCAGAAGCTGCACGAGCTGCAAGAGAAGCTGAGCCC
ACTGGGCGAGGAGATGCGCGACCGCGCGCGCGCCCATGTGGACGCGCTGC
GCACGCATCTGGCCCCCTACAGCGACGAGCTGCGCCAGCGCTTGGCCGCG
CGCCTTGAGGCTCTCAAGGAGAACGGCGGCGCCAGACTGGCCGAGTACCA
CGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAGCCCG
CGCTCGAGGACCTCCGCCAAGGCCTGCTGCCCGTGCTGGAGAGCTTCAAG
GTCAGCTTCCTGAGCGCTCTCGAGGAGTACACTAAGAAGCTCAACACCCA
GTGA
>hg17_chr11_1812377_1812407_+
ATGCTCCACCTGCATGGCTGGCAAACCATG
>hg17_chr12_38440094_38440321_-
GAGCTTTCTTCCTCTATGCTGGATTTGCTGCTGTGGGACTCCTTTTCATC
TATGGCTGTCTTCCTGAGACCAAAGGCAAAAAATTAGAGGAAATTGAATC
ACTCTTTGACAACAGGCTATGTACATGTGGCACTTCAGATTCTGATGAAG
GGAGATATATTGAATATATTCGGGTAAAGGGAAGTAACTATCATCTTTCT
GACAATGATGCTTCTGATGTGGAATAA
>hg17_chr13_112381694_112381953_+
ATGAACTCACCAGAGGCGAGGCTCTGCGTTGCTCAATGCAGAGACTCTTA
CCCAGGGTGTCAGCCTCTGAAAGATACACGTGCCTGGGCCTCTTCCCTGA
AGATGGACCCGGCAGGTCTGGAGGGAGGCCCCCGTGATGAATCCCGTGAT
GAGCCGCCGATCCGAGCTCAGGCTGCGTCATGGGACCAGCCACAAGGTTG
CCTGACCTATAAAGGTCGCAGGAGTGCCTCAGGGACACAGAAGCAGTTAC
AGCTGCCAG