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comparison dmri.xml @ 27:c1fba91da909 draft

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author greg
date Thu, 30 Nov 2017 08:10:04 -0500
parents 264b9ed43fe3
children da507620bd74
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26:65a365c8ca55 27:c1fba91da909
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 python '$__tool_directory__/dmri.py' 7 python '$__tool_directory__/dmri.py'
8 --drmi_dataset $drmi_dataset 8 --drmi_dataset $drmi_dataset
9 --output_png '$output_png' 9 --output_png '$output_png'
10 --output_nifti1 '$output_nifti1' 10 --output_nifti1 '$output_nifti1'
11 --output_nifti1_extra_files '$output_nifti1.files_path'
11 &>/dev/null 12 &>/dev/null
12 ]]></command> 13 ]]></command>
13 <inputs> 14 <inputs>
14 <param name="drmi_dataset" type="select" label="dRMI dataset"> 15 <param name="drmi_dataset" type="select" label="dRMI dataset">
15 <option value="sherbrooke_3shell" selected="true">sherbrooke_3shell</option> 16 <option value="stanford_hardi" selected="true">stanford_hardi</option>
16 <option value="stanford_hardi">stanford_hardi</option> 17 <option value="sherbrooke_3shell">sherbrooke_3shell</option>
17 </param> 18 </param>
18 </inputs> 19 </inputs>
19 <outputs> 20 <outputs>
20 <data name="output_png" format="png" label="${tool.name}: middle axial slice without (left) and with (right) diffusion weighting" /> 21 <data name="output_png" format="png" label="${tool.name}: middle axial slice without (left) and with (right) diffusion weighting" />
21 <data name="output_nifti1" format="nifti1" label="${tool.name}: Nifti1 image" /> 22 <data name="output_nifti1" format="nifti1" label="${tool.name}: Nifti1 image" />