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13
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1 <tool id="dmri" name="Download dMRI" version="0.13.0">
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2 <description>dataset</description>
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0
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3 <requirements>
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4 <requirement type="package" version="0.13.0">dipy</requirement>
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5 </requirements>
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6 <command detect_errors="exit_code"><![CDATA[
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7 python '$__tool_directory__/dmri.py'
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8 --drmi_dataset_type '$drmi_dataset_type_cond.drmi_dataset_type'
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20
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9 --drmi_dataset $drmi_dataset
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10 #if str($drmi_dataset) == "stanford_hardi":
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11 --output_png '$output_png'
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12 #end if
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17
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13 --output_nifti1 '$output_nifti1'
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14 --output_nifti1_extra_files '$output_nifti1.files_path'
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15 &>/dev/null
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16 ]]></command>
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17 <inputs>
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29
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18 <conditional name="drmi_dataset_type_cond">
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19 <param name="drmi_dataset_type" type="select" label="Select download type">
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20 <option value="dataset" selected="true">Dataset only</option>
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21 <option value="dataset and label map">Dataset and label map</option>
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22 </param>
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23 <when option="dataset"/>
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24 <when option="map"/>
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25 </conditional>
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20
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26 <param name="drmi_dataset" type="select" label="dRMI dataset">
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27 <option value="stanford_hardi" selected="true">stanford_hardi</option>
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34
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28 <option value="stanford_t1">stanford_t1</option>
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20
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29 </param>
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30 </inputs>
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31 <outputs>
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40
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32 <data name="output_png" format="png" label="${tool.name}: middle axial slice without (left) and with (right) diffusion weighting">
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33 <filter>drmi_dataset == 'stanford_hardi'</filter>
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34 </data>
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35 <data name="output_nifti1" format="nifti1" label="dRMI dataset $drmi_dataset: ($drmi_dataset_type_cond['drmi_dataset_type']) Nifti1 image" />
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0
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36 </outputs>
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37 <tests>
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38 <test>
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39 </test>
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40 </tests>
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41 <help>
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42 **What it does**
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43
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44 -----
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45
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46 **Options**
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47
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48 </help>
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49 <citations>
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50 </citations>
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51 </tool>
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