Mercurial > repos > greg > create_genome_tracks

changeset 3:3bc9d3e88e7b draft

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Uploaded
author greg
date Fri, 10 Nov 2017 13:50:32 -0500
parents 64b7d66acd75
children 47f6ba0fc3f4
files create_genome_tracks.R
diffstat 1 files changed, 1 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/create_genome_tracks.R	Fri Nov 10 13:48:01 2017 -0500
+++ b/create_genome_tracks.R	Fri Nov 10 13:50:32 2017 -0500
@@ -113,18 +113,12 @@
     return(cells);
 }
 
-# cell_info: shortid match with those in states,
-# long id, cell description, text color
-#run<-function(state_files, hub_id, opt$build, chrom_len_file, state_color, opt$target_url="http://bx.psu.edu/~yuzhang/tmp/", tracks_output_dir=NULL, hub_name=NULL, cell_info=NULL, header=NULL, statename=NULL)
-
 if(length(opt$hub_name) == 0) {
     hub_name = opt$hub_id;
 }
 
 # Create the tracks output directory.
-if(length(tracks_output_dir) == 0) {
-    tracks_output_dir = paste("tracks_", hub_id, "/", sep="");
-}
+tracks_output_dir = paste("tracks_", hub_id, "/", sep="");
 dir.create(tracks_output_dir, showWarnings=FALSE);
 
 # Create the color scheme.