Mercurial > repos > galaxyp > openms
diff FileInfo.xml @ 0:3070d71e0e5c draft
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author | bgruening |
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date | Thu, 16 Apr 2015 08:37:04 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/FileInfo.xml Thu Apr 16 08:37:04 2015 -0400 @@ -0,0 +1,73 @@ +<?xml version='1.0' encoding='UTF-8'?> +<tool id="FileInfo" name="FileInfo" version="2.0.0"> + <description>Shows basic information about the file, such as data ranges and file type.</description> + <macros> + <token name="@EXECUTABLE@">FileInfo</token> + <import>macros.xml</import> + </macros> + <expand macro="stdio"/> + <expand macro="requirements"/> + <command>FileInfo + +#if $param_in: + -in $param_in +#end if +#if $param_out: + -out $param_out +#end if +#if $param_out_tsv: + -out_tsv $param_out_tsv +#end if +#if $param_m: + -m +#end if +#if $param_p: + -p +#end if +#if $param_s: + -s +#end if +#if $param_d: + -d +#end if +#if $param_c: + -c +#end if +#if $param_v: + -v +#end if +#if $param_i: + -i +#end if +-threads \${GALAXY_SLOTS:-24} +#if $adv_opts.adv_opts_selector=='advanced': + #if $adv_opts.param_force: + -force +#end if +#end if +</command> + <inputs> + <param name="param_in" type="data" format="mgf,mzml,mzxml,idxml,pepxml,featurexml,consensusxml" optional="False" label="input file" help="(-in) "/> + <param name="param_m" type="boolean" truevalue="-m" falsevalue="" checked="false" optional="True" label="Show meta information about the whole experiment" help="(-m) "/> + <param name="param_p" type="boolean" truevalue="-p" falsevalue="" checked="false" optional="True" label="Shows data processing information" help="(-p) "/> + <param name="param_s" type="boolean" truevalue="-s" falsevalue="" checked="false" optional="True" label="Computes a five-number statistics of intensities, qualities, and widths" help="(-s) "/> + <param name="param_d" type="boolean" truevalue="-d" falsevalue="" checked="false" optional="True" label="Show detailed listing of all spectra and chromatograms (peak files only)" help="(-d) "/> + <param name="param_c" type="boolean" truevalue="-c" falsevalue="" checked="false" optional="True" label="Check for corrupt data in the file (peak files only)" help="(-c) "/> + <param name="param_v" type="boolean" truevalue="-v" falsevalue="" checked="false" optional="True" label="Validate the file only (for mzML, mzData, mzXML, featureXML, idXML, consensusXML, pepXML)" help="(-v) "/> + <param name="param_i" type="boolean" truevalue="-i" falsevalue="" checked="false" optional="True" label="Check whether a given mzML file contains valid indices (conforming to the indexedmzML standard)" help="(-i) "/> + <expand macro="advanced_options"> + <param name="param_force" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> + </expand> + </inputs> + <outputs> + <data name="param_out" format="txt"/> + <data name="param_out_tsv" format="tabular"/> + </outputs> + <help>**What it does** + +Shows basic information about the file, such as data ranges and file type. + + +For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FileInfo.html</help> + <expand macro="references"/> +</tool>