diff FileInfo.xml @ 0:3070d71e0e5c draft

Uploaded
author bgruening
date Thu, 16 Apr 2015 08:37:04 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/FileInfo.xml	Thu Apr 16 08:37:04 2015 -0400
@@ -0,0 +1,73 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="FileInfo" name="FileInfo" version="2.0.0">
+  <description>Shows basic information about the file, such as data ranges and file type.</description>
+  <macros>
+    <token name="@EXECUTABLE@">FileInfo</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>FileInfo
+
+#if $param_in:
+  -in $param_in
+#end if
+#if $param_out:
+  -out $param_out
+#end if
+#if $param_out_tsv:
+  -out_tsv $param_out_tsv
+#end if
+#if $param_m:
+  -m
+#end if
+#if $param_p:
+  -p
+#end if
+#if $param_s:
+  -s
+#end if
+#if $param_d:
+  -d
+#end if
+#if $param_c:
+  -c
+#end if
+#if $param_v:
+  -v
+#end if
+#if $param_i:
+  -i
+#end if
+-threads \${GALAXY_SLOTS:-24} 
+#if $adv_opts.adv_opts_selector=='advanced':
+    #if $adv_opts.param_force:
+  -force
+#end if
+#end if
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="mgf,mzml,mzxml,idxml,pepxml,featurexml,consensusxml" optional="False" label="input file" help="(-in) "/>
+    <param name="param_m" type="boolean" truevalue="-m" falsevalue="" checked="false" optional="True" label="Show meta information about the whole experiment" help="(-m) "/>
+    <param name="param_p" type="boolean" truevalue="-p" falsevalue="" checked="false" optional="True" label="Shows data processing information" help="(-p) "/>
+    <param name="param_s" type="boolean" truevalue="-s" falsevalue="" checked="false" optional="True" label="Computes a five-number statistics of intensities, qualities, and widths" help="(-s) "/>
+    <param name="param_d" type="boolean" truevalue="-d" falsevalue="" checked="false" optional="True" label="Show detailed listing of all spectra and chromatograms (peak files only)" help="(-d) "/>
+    <param name="param_c" type="boolean" truevalue="-c" falsevalue="" checked="false" optional="True" label="Check for corrupt data in the file (peak files only)" help="(-c) "/>
+    <param name="param_v" type="boolean" truevalue="-v" falsevalue="" checked="false" optional="True" label="Validate the file only (for mzML, mzData, mzXML, featureXML, idXML, consensusXML, pepXML)" help="(-v) "/>
+    <param name="param_i" type="boolean" truevalue="-i" falsevalue="" checked="false" optional="True" label="Check whether a given mzML file contains valid indices (conforming to the indexedmzML standard)" help="(-i) "/>
+    <expand macro="advanced_options">
+      <param name="param_force" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
+    </expand>
+  </inputs>
+  <outputs>
+    <data name="param_out" format="txt"/>
+    <data name="param_out_tsv" format="tabular"/>
+  </outputs>
+  <help>**What it does**
+
+Shows basic information about the file, such as data ranges and file type.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FileInfo.html</help>
+  <expand macro="references"/>
+</tool>