Mercurial > repos > galaxyp > openms
view FileInfo.xml @ 4:60a33af52042 draft default tip
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author | galaxyp |
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date | Wed, 13 May 2015 21:19:44 -0400 |
parents | 3070d71e0e5c |
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<?xml version='1.0' encoding='UTF-8'?> <tool id="FileInfo" name="FileInfo" version="2.0.0"> <description>Shows basic information about the file, such as data ranges and file type.</description> <macros> <token name="@EXECUTABLE@">FileInfo</token> <import>macros.xml</import> </macros> <expand macro="stdio"/> <expand macro="requirements"/> <command>FileInfo #if $param_in: -in $param_in #end if #if $param_out: -out $param_out #end if #if $param_out_tsv: -out_tsv $param_out_tsv #end if #if $param_m: -m #end if #if $param_p: -p #end if #if $param_s: -s #end if #if $param_d: -d #end if #if $param_c: -c #end if #if $param_v: -v #end if #if $param_i: -i #end if -threads \${GALAXY_SLOTS:-24} #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: -force #end if #end if </command> <inputs> <param name="param_in" type="data" format="mgf,mzml,mzxml,idxml,pepxml,featurexml,consensusxml" optional="False" label="input file" help="(-in) "/> <param name="param_m" type="boolean" truevalue="-m" falsevalue="" checked="false" optional="True" label="Show meta information about the whole experiment" help="(-m) "/> <param name="param_p" type="boolean" truevalue="-p" falsevalue="" checked="false" optional="True" label="Shows data processing information" help="(-p) "/> <param name="param_s" type="boolean" truevalue="-s" falsevalue="" checked="false" optional="True" label="Computes a five-number statistics of intensities, qualities, and widths" help="(-s) "/> <param name="param_d" type="boolean" truevalue="-d" falsevalue="" checked="false" optional="True" label="Show detailed listing of all spectra and chromatograms (peak files only)" help="(-d) "/> <param name="param_c" type="boolean" truevalue="-c" falsevalue="" checked="false" optional="True" label="Check for corrupt data in the file (peak files only)" help="(-c) "/> <param name="param_v" type="boolean" truevalue="-v" falsevalue="" checked="false" optional="True" label="Validate the file only (for mzML, mzData, mzXML, featureXML, idXML, consensusXML, pepXML)" help="(-v) "/> <param name="param_i" type="boolean" truevalue="-i" falsevalue="" checked="false" optional="True" label="Check whether a given mzML file contains valid indices (conforming to the indexedmzML standard)" help="(-i) "/> <expand macro="advanced_options"> <param name="param_force" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> </expand> </inputs> <outputs> <data name="param_out" format="txt"/> <data name="param_out_tsv" format="tabular"/> </outputs> <help>**What it does** Shows basic information about the file, such as data ranges and file type. For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FileInfo.html</help> <expand macro="references"/> </tool>