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comparison FileInfo.xml @ 0:3070d71e0e5c draft

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author bgruening
date Thu, 16 Apr 2015 08:37:04 -0400
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-1:000000000000 0:3070d71e0e5c
1 <?xml version='1.0' encoding='UTF-8'?>
2 <tool id="FileInfo" name="FileInfo" version="2.0.0">
3 <description>Shows basic information about the file, such as data ranges and file type.</description>
4 <macros>
5 <token name="@EXECUTABLE@">FileInfo</token>
6 <import>macros.xml</import>
7 </macros>
8 <expand macro="stdio"/>
9 <expand macro="requirements"/>
10 <command>FileInfo
11
12 #if $param_in:
13 -in $param_in
14 #end if
15 #if $param_out:
16 -out $param_out
17 #end if
18 #if $param_out_tsv:
19 -out_tsv $param_out_tsv
20 #end if
21 #if $param_m:
22 -m
23 #end if
24 #if $param_p:
25 -p
26 #end if
27 #if $param_s:
28 -s
29 #end if
30 #if $param_d:
31 -d
32 #end if
33 #if $param_c:
34 -c
35 #end if
36 #if $param_v:
37 -v
38 #end if
39 #if $param_i:
40 -i
41 #end if
42 -threads \${GALAXY_SLOTS:-24}
43 #if $adv_opts.adv_opts_selector=='advanced':
44 #if $adv_opts.param_force:
45 -force
46 #end if
47 #end if
48 </command>
49 <inputs>
50 <param name="param_in" type="data" format="mgf,mzml,mzxml,idxml,pepxml,featurexml,consensusxml" optional="False" label="input file" help="(-in) "/>
51 <param name="param_m" type="boolean" truevalue="-m" falsevalue="" checked="false" optional="True" label="Show meta information about the whole experiment" help="(-m) "/>
52 <param name="param_p" type="boolean" truevalue="-p" falsevalue="" checked="false" optional="True" label="Shows data processing information" help="(-p) "/>
53 <param name="param_s" type="boolean" truevalue="-s" falsevalue="" checked="false" optional="True" label="Computes a five-number statistics of intensities, qualities, and widths" help="(-s) "/>
54 <param name="param_d" type="boolean" truevalue="-d" falsevalue="" checked="false" optional="True" label="Show detailed listing of all spectra and chromatograms (peak files only)" help="(-d) "/>
55 <param name="param_c" type="boolean" truevalue="-c" falsevalue="" checked="false" optional="True" label="Check for corrupt data in the file (peak files only)" help="(-c) "/>
56 <param name="param_v" type="boolean" truevalue="-v" falsevalue="" checked="false" optional="True" label="Validate the file only (for mzML, mzData, mzXML, featureXML, idXML, consensusXML, pepXML)" help="(-v) "/>
57 <param name="param_i" type="boolean" truevalue="-i" falsevalue="" checked="false" optional="True" label="Check whether a given mzML file contains valid indices (conforming to the indexedmzML standard)" help="(-i) "/>
58 <expand macro="advanced_options">
59 <param name="param_force" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
60 </expand>
61 </inputs>
62 <outputs>
63 <data name="param_out" format="txt"/>
64 <data name="param_out_tsv" format="tabular"/>
65 </outputs>
66 <help>**What it does**
67
68 Shows basic information about the file, such as data ranges and file type.
69
70
71 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FileInfo.html</help>
72 <expand macro="references"/>
73 </tool>