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annotate FastQC/tool_dependencies.xml @ 0:42251cbdeeac draft

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Initial commit of test for FastQC with installation of the java stuff
author fubar
date Mon, 03 Jun 2013 20:30:24 -0400
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children 45cd27a2ad5c
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42251cbdeeac Initial commit of test for FastQC with installation of the java stuff
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <set_environment version="1.0">
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4 <environment_variable name="FASTQC_INSTALL_PATH" action="set_to">$INSTALL_DIR/jars/FastQC</environment_variable>
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5 </set_environment>
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6 <package name="FastQC" version="0.10.1">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
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10 <action type="move_directory_files">
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11 <source_directory>FastQC</source_directory>
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12 <destination_directory>$INSTALL_DIR/jars</destination_directory>
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13 </action>
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14 <action type="shell_command">chmod ugo+x $INSTALL_DIR/jars/FastQC/fastqc</action>
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15 </actions>
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16 </install>
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17 <readme>You need a working unzip command line executable to install this tool and a suitable working Java run time environment
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18 available to all potential execution nodes for this tool to work.
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19 Please see http://www.bioinformatics.babraham.ac.uk/projects/fastqc for all FastQC documentation</readme>
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20 </package>
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21 </tool_dependency>