Mercurial > repos > fubar > fastqc_320
comparison FastQC/tool_dependencies.xml @ 0:42251cbdeeac draft
Initial commit of test for FastQC with installation of the java stuff
| author | fubar |
|---|---|
| date | Mon, 03 Jun 2013 20:30:24 -0400 |
| parents | |
| children | 45cd27a2ad5c |
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| -1:000000000000 | 0:42251cbdeeac |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <set_environment version="1.0"> | |
| 4 <environment_variable name="FASTQC_INSTALL_PATH" action="set_to">$INSTALL_DIR/jars/FastQC</environment_variable> | |
| 5 </set_environment> | |
| 6 <package name="FastQC" version="0.10.1"> | |
| 7 <install version="1.0"> | |
| 8 <actions> | |
| 9 <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action> | |
| 10 <action type="move_directory_files"> | |
| 11 <source_directory>FastQC</source_directory> | |
| 12 <destination_directory>$INSTALL_DIR/jars</destination_directory> | |
| 13 </action> | |
| 14 <action type="shell_command">chmod ugo+x $INSTALL_DIR/jars/FastQC/fastqc</action> | |
| 15 </actions> | |
| 16 </install> | |
| 17 <readme>You need a working unzip command line executable to install this tool and a suitable working Java run time environment | |
| 18 available to all potential execution nodes for this tool to work. | |
| 19 Please see http://www.bioinformatics.babraham.ac.uk/projects/fastqc for all FastQC documentation</readme> | |
| 20 </package> | |
| 21 </tool_dependency> |