Mercurial > repos > drosofff > package_ged_oases

annotate tool_dependencies.xml @ 0:e8f1832c40e6 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author drosofff
date Fri, 29 May 2015 12:17:08 -0400
parents
children 10a46b694a2a
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
1 <?xml version="1.0"?>
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
2 <tool_dependency>
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
3 <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3">
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
4 <repository changeset_revision="c071c73e0c62" name="velvet_ged_package" owner="drosofff" prior_installation_required="True" toolshed="http://lbcd41.snv.jussieu.fr:9009" />
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
5 </package>
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
6 <package name="oases" version="0.2.08_7a32460a60929b510037952ae815bb6e29b68123">
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
7 <install version="1.0">
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
8 <actions>
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
9 <action type="shell_command">git clone git://github.com/dzerbino/oases.git</action>
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
10 <action type="shell_command">git reset --hard 7a32460a60929b510037952ae815bb6e29b68123</action>
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
11 <action type="set_environment_for_install">
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
12 <repository changeset_revision="ce8a4a8d9604" name="velvet_ged_package" owner="drosofff" prior_installation_required="True" toolshed="http://lbcd41.snv.jussieu.fr:9009">
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
13 <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3" />
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
14 </repository>
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
15 </action>
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
16 <action type="shell_command">VELVETPATH=`echo $PATH | awk -F: '{print $1}'`; make VELVET_DIR=$VELVETPATH MAXKMERLENGTH=35</action>
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
17 <action type="move_directory_files">
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
18 <source_directory>.</source_directory>
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
19 <destination_directory>$INSTALL_DIR</destination_directory>
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
20 </action>
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
21 <!-- <action type="move_file">
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
22 <source>oases</source>
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
23 <destination>$INSTALL_DIR</destination>
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
24 </action> -->
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
25 <action type="set_environment">
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
26 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
27 </action>
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
28 </actions>
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
29 </install>
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
30 </package>
e8f1832c40e6 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
31 </tool_dependency>