Mercurial > repos > drosofff > package_ged_oases

comparison tool_dependencies.xml @ 0:e8f1832c40e6 draft

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author drosofff
date Fri, 29 May 2015 12:17:08 -0400
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children 10a46b694a2a
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-1:000000000000 0:e8f1832c40e6
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3">
4 <repository changeset_revision="c071c73e0c62" name="velvet_ged_package" owner="drosofff" prior_installation_required="True" toolshed="http://lbcd41.snv.jussieu.fr:9009" />
5 </package>
6 <package name="oases" version="0.2.08_7a32460a60929b510037952ae815bb6e29b68123">
7 <install version="1.0">
8 <actions>
9 <action type="shell_command">git clone git://github.com/dzerbino/oases.git</action>
10 <action type="shell_command">git reset --hard 7a32460a60929b510037952ae815bb6e29b68123</action>
11 <action type="set_environment_for_install">
12 <repository changeset_revision="ce8a4a8d9604" name="velvet_ged_package" owner="drosofff" prior_installation_required="True" toolshed="http://lbcd41.snv.jussieu.fr:9009">
13 <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3" />
14 </repository>
15 </action>
16 <action type="shell_command">VELVETPATH=`echo $PATH | awk -F: '{print $1}'`; make VELVET_DIR=$VELVETPATH MAXKMERLENGTH=35</action>
17 <action type="move_directory_files">
18 <source_directory>.</source_directory>
19 <destination_directory>$INSTALL_DIR</destination_directory>
20 </action>
21 <!-- <action type="move_file">
22 <source>oases</source>
23 <destination>$INSTALL_DIR</destination>
24 </action> -->
25 <action type="set_environment">
26 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
27 </action>
28 </actions>
29 </install>
30 </package>
31 </tool_dependency>