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changeset 8:c441153cb4c2 draft

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planemo upload for repository https://github.com/tseemann/snippy commit 73ec6ea773b1b88f7c32a2e8bc57b644b82f7ff9-dirty
author dfornika
date Mon, 21 Jan 2019 18:26:12 -0500
parents ab3026667cdc
children caed59c13f82
files snippy-core.xml snippy_core_wrapper.py
diffstat 2 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/snippy-core.xml	Mon Jan 21 18:17:52 2019 -0500
+++ b/snippy-core.xml	Mon Jan 21 18:26:12 2019 -0500
@@ -10,7 +10,7 @@
 
         python '$__tool_directory__/snippy_core_wrapper.py'
             --ref '$ref'
-            --indirs '${" ".join(map(str, $indirs))}'
+            --indirs '$indirs'
 
     ]]></command>
 
--- a/snippy_core_wrapper.py	Mon Jan 21 18:17:52 2019 -0500
+++ b/snippy_core_wrapper.py	Mon Jan 21 18:26:12 2019 -0500
@@ -22,7 +22,7 @@
 def main():
     parser = argparse.ArgumentParser()
     parser.add_argument('-r', '--ref', help='Reference fasta', required=True)
-    parser.add_argument('-i', '--indirs', nargs='+')
+    parser.add_argument('-i', '--indirs')
     args = parser.parse_args()
 
     snippy_core_command_line = ['snippy-core', '--ref', args.ref]