# HG changeset patch
# User dfornika
# Date 1548113172 18000
# Node ID c441153cb4c275d7c5372685dfa6b01c20e83b4f
# Parent  ab3026667cdcaff577c16d0b85937140e8afb6d2
planemo upload for repository https://github.com/tseemann/snippy commit 73ec6ea773b1b88f7c32a2e8bc57b644b82f7ff9-dirty

diff -r ab3026667cdc -r c441153cb4c2 snippy-core.xml
--- a/snippy-core.xml	Mon Jan 21 18:17:52 2019 -0500
+++ b/snippy-core.xml	Mon Jan 21 18:26:12 2019 -0500
@@ -10,7 +10,7 @@
 
         python '$__tool_directory__/snippy_core_wrapper.py'
             --ref '$ref'
-            --indirs '${" ".join(map(str, $indirs))}'
+            --indirs '$indirs'
 
     ]]></command>
 
diff -r ab3026667cdc -r c441153cb4c2 snippy_core_wrapper.py
--- a/snippy_core_wrapper.py	Mon Jan 21 18:17:52 2019 -0500
+++ b/snippy_core_wrapper.py	Mon Jan 21 18:26:12 2019 -0500
@@ -22,7 +22,7 @@
 def main():
     parser = argparse.ArgumentParser()
     parser.add_argument('-r', '--ref', help='Reference fasta', required=True)
-    parser.add_argument('-i', '--indirs', nargs='+')
+    parser.add_argument('-i', '--indirs')
     args = parser.parse_args()
 
     snippy_core_command_line = ['snippy-core', '--ref', args.ref]