Mercurial > repos > dfornika > screen_abricate_results
changeset 1:51fa887f7cfb draft
planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/screen_abricate_results commit 607fa944c574740d29ea3ce948707b8bd17c7d58-dirty
| author | dfornika |
|---|---|
| date | Thu, 26 Sep 2019 17:57:20 -0400 |
| parents | a54032ac6a55 |
| children | b776ba9e502f |
| files | abricate_report_screening_files.loc.sample tool_data_table_conf.xml.sample tool_data_table_conf.xml.test |
| diffstat | 3 files changed, 23 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/abricate_report_screening_files.loc.sample Thu Sep 26 17:57:20 2019 -0400 @@ -0,0 +1,7 @@ +# Expect three columns, tab separated, as follows: +# - value (Galaxy records this in the Galaxy DB) +# - name (Galaxy shows this in the UI) +# - path (Path to the abricate report screening file (tsv format)) +# +# e.g. +# 76cc857a-7747-4d69-b2a3-a8fbddbf64c2<tab>Carbapenemase Genes<tab>/path/to/screening_file.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.sample Thu Sep 26 17:57:20 2019 -0400 @@ -0,0 +1,8 @@ +<?xml version="1.0"?> +<tables> + <!-- Locations of abricate report screening files in the required format --> + <table name="abricate_report_screening_files" comment_char="#"> + <columns>value, name, path</columns> + <file path="tool-data/abricate_report_screening_files.loc" /> + </table> +</tables>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.test Thu Sep 26 17:57:20 2019 -0400 @@ -0,0 +1,8 @@ +<?xml version="1.0"?> +<tables> + <!-- Locations of Kraken2 database in the required format --> + <table name="kraken2_databases" comment_char="#"> + <columns>value, name, path</columns> + <file path="${__HERE__}/test-data/test_database.loc" /> + </table> +</tables>