# HG changeset patch
# User dfornika
# Date 1569535040 14400
# Node ID 51fa887f7cfbd79c6863ac1b0b81825ae3ba7fd9
# Parent  a54032ac6a5575c830e8ec2d00bbb8247fab0232
planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/screen_abricate_results commit 607fa944c574740d29ea3ce948707b8bd17c7d58-dirty

diff -r a54032ac6a55 -r 51fa887f7cfb abricate_report_screening_files.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/abricate_report_screening_files.loc.sample	Thu Sep 26 17:57:20 2019 -0400
@@ -0,0 +1,7 @@
+# Expect three columns, tab separated, as follows:
+# - value (Galaxy records this in the Galaxy DB)
+# - name (Galaxy shows this in the UI)
+# - path (Path to the abricate report screening file (tsv format))
+#
+# e.g.
+# 76cc857a-7747-4d69-b2a3-a8fbddbf64c2<tab>Carbapenemase Genes<tab>/path/to/screening_file.tsv
diff -r a54032ac6a55 -r 51fa887f7cfb tool_data_table_conf.xml.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_data_table_conf.xml.sample	Thu Sep 26 17:57:20 2019 -0400
@@ -0,0 +1,8 @@
+<?xml version="1.0"?>
+<tables>
+    <!-- Locations of abricate report screening files in the required format -->
+    <table name="abricate_report_screening_files" comment_char="#">
+        <columns>value, name, path</columns>
+        <file path="tool-data/abricate_report_screening_files.loc" />
+    </table>
+</tables>
diff -r a54032ac6a55 -r 51fa887f7cfb tool_data_table_conf.xml.test
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_data_table_conf.xml.test	Thu Sep 26 17:57:20 2019 -0400
@@ -0,0 +1,8 @@
+<?xml version="1.0"?>
+<tables>
+    <!-- Locations of Kraken2 database in the required format -->
+    <table name="kraken2_databases" comment_char="#">
+        <columns>value, name, path</columns>
+        <file path="${__HERE__}/test-data/test_database.loc" />
+    </table>
+</tables>