Mercurial > repos > dfornika > screen_abricate_results

changeset 2:b776ba9e502f draft

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planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/screen_abricate_results commit 607fa944c574740d29ea3ce948707b8bd17c7d58-dirty
author dfornika
date Thu, 26 Sep 2019 18:03:34 -0400
parents 51fa887f7cfb
children 03e8644e3fd7
files screen_abricate_results.xml
diffstat 1 files changed, 6 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/screen_abricate_results.xml	Thu Sep 26 17:57:20 2019 -0400
+++ b/screen_abricate_results.xml	Thu Sep 26 18:03:34 2019 -0400
@@ -10,7 +10,11 @@
     ]]></command>
     <inputs>
         <param name="abricate_report" type="data" format="tabular" />
-        <param name="screen" type="data" format="json" />
+        <param name="screening_file" type="select" format="tabular">
+	    <options from_data_table="abricate_report_screening_files">
+	        <validator type="no_options" message="No abricate report screening files are available" />
+            </options>
+	</param>
     </inputs>
     <outputs>
         <data name="output" type="data" label="Output" />
@@ -18,7 +22,7 @@
     <tests>
         <test>
             <param name="abricate_report" value="abricate_report.tsv"/>
-            <param name="screen" value="screen.json"/>
+            <param name="screen" value="screen.tsv"/>
         </test>
     </tests>
     <help><![CDATA[