Mercurial > repos > dfornika > screen_abricate_report
annotate screen_abricate_report.xml @ 3:1c1c680c70a0 draft default tip
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
author | dfornika |
---|---|
date | Thu, 02 Jan 2020 21:04:04 +0000 |
parents | 378696e5f81c |
children |
rev | line source |
---|---|
3
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
1 <tool id="screen_abricate_report" name="Screen Abricate Report" version="0.3.0"> |
0
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
2 <description>Screens an abricate report for genes of interest</description> |
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
3 <requirements> |
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
4 </requirements> |
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
5 <command detect_errors="exit_code"><![CDATA[ |
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
6 '${__tool_directory__}/screen_abricate_report.py' |
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
7 '${abricate_report}' |
3
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
8 #if str( $screening_file_source.screening_file_source_selector ) == "tool_data_table": |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
9 #set $input_screening_file = str( $screening_file_source.screening_file.fields.path ) |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
10 #else: |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
11 #set $input_screening_file = str( $screening_file_source.screening_file ) |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
12 #end if |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
13 --screening_file '${input_screening_file}' |
1
40003338a8e8
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
0
diff
changeset
|
14 --screened_report '${screened_report}' |
40003338a8e8
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
0
diff
changeset
|
15 --gene_detection_status '${gene_detection_status}' |
3
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
16 --min_coverage '${min_coverage}' |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
17 --min_identity '${min_identity}' && |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
18 cp '${input_screening_file}' '${output_screening_file}' |
0
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
19 ]]></command> |
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
20 <inputs> |
3
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
21 <conditional name="screening_file_source"> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
22 <param name="screening_file_source_selector" type="select" label="Select a gene screening file from your history or use one from a tool data table?" |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
23 help="Screening files must be stored in the 'abricate_report_screening_files' tool data table"> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
24 <option value="tool_data_table">From tool data table</option> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
25 <option value="history">From history</option> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
26 </param> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
27 <when value="tool_data_table"> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
28 <param name="screening_file" type="select" format="tabular"> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
29 <options from_data_table="abricate_report_screening_files"> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
30 <validator type="no_options" message="No abricate report screening files are available" /> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
31 </options> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
32 </param> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
33 </when> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
34 <when value="history"> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
35 <param name="screening_file" type="data" format="tabular" label="Gene screening file" help="A two-column tab-delimited file with gene names and regular expressions" /> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
36 </when> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
37 </conditional> |
0
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
38 <param name="abricate_report" type="data" format="tabular" /> |
3
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
39 <param name="min_coverage" type="float" min="0.0" value="90.0" max="100.0" /> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
40 <param name="min_identity" type="float" min="0.0" value="90.0" max="100.0" /> |
0
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
41 </inputs> |
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
42 <outputs> |
3
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
43 <data name="screened_report" format="tabular" label="Screened Abricate Report" /> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
44 <data name="gene_detection_status" format="tabular" label="Gene Detection Status" /> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
45 <data name="output_screening_file" format="tabular" /> |
0
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
46 </outputs> |
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
47 <tests> |
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
48 <test> |
3
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
49 <param name="screening_file_source.screening_file_source_selector" value="tool_data_table" /> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
50 <param name="screening_file_source.screening_file" value="test_entry"/> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
51 <param name="abricate_report" value="SAMN13042171_abricate_report.tsv"/> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
52 <output name="screened_report" file="SAMN13042171_abricate_report_screened.tsv" ftype="tabular"/> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
53 <output name="gene_detection_status" file="SAMN13042171_gene_detection_status.tsv" ftype="tabular"/> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
54 </test> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
55 <test> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
56 <param name="screening_file_source.screening_file_source_selector" value="history" /> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
57 <param name="screening_file_source.screening_file" value="screening_file.tsv"/> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
58 <param name="abricate_report" value="SAMN13042171_abricate_report.tsv"/> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
59 <output name="screened_report" file="SAMN13042171_abricate_report_screened.tsv" ftype="tabular"/> |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
60 <output name="gene_detection_status" file="SAMN13042171_gene_detection_status.tsv" ftype="tabular"/> |
0
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
61 </test> |
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
62 </tests> |
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
63 <help><![CDATA[ |
3
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
64 This tool is used to filter (ie. 'screen') an abricate report to only include |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
65 specific genes of interest. |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
66 |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
67 A list of genes is supplied in a 'screening file', which is a two-column .tsv |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
68 with headers 'gene_name' and 'regex'. The first column gives the name of the |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
69 gene of interest, and the second column is a regular expression that can be used |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
70 to identify examples of that gene in the 'GENE' column of the abricate report. |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
71 |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
72 For example, one might use the regex '^KPC-\d+$' to identify all alleles of the |
1c1c680c70a0
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467-dirty"
dfornika
parents:
2
diff
changeset
|
73 KPC gene (KPC-2, KPC-3, KPC-4, ..., KPC-10, ...) |
0
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
74 ]]></help> |
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
75 <citations> |
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
76 </citations> |
2ffd23634c1e
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
diff
changeset
|
77 </tool> |