Mercurial > repos > dfornika > screen_abricate_report

diff screen_abricate_report.xml @ 1:40003338a8e8 draft

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planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
author dfornika
date Fri, 27 Sep 2019 13:31:43 -0400
parents 2ffd23634c1e
children 378696e5f81c
line wrap: on
line diff
--- a/screen_abricate_report.xml	Thu Sep 26 19:37:27 2019 -0400
+++ b/screen_abricate_report.xml	Fri Sep 27 13:31:43 2019 -0400
@@ -6,7 +6,8 @@
         '${__tool_directory__}/screen_abricate_report.py'
              '${abricate_report}'
              --screen '${screening_file.fields.path}'
-             > '${output}'
+             --screened_report '${screened_report}'
+             --gene_detection_status '${gene_detection_status}'
     ]]></command>
     <inputs>
         <param name="abricate_report" type="data" format="tabular" />
@@ -17,7 +18,8 @@
 	</param>
     </inputs>
     <outputs>
-        <data name="output" type="data" format="tabular" label="Screened Abricate Report" />
+        <data name="screened_report" type="data" format="tabular" label="Screened Abricate Report" />
+        <data name="gene_detection_status" type="data" format="tabular" label="Gene Detection Status" />
     </outputs>
     <tests>
         <test>