# HG changeset patch
# User dfornika
# Date 1547513639 18000
# Node ID b602bf9f81d235dd04731c5f44c71a5ad2adb1c0
# Parent  43a4655069401af7aa560a7f82eb148964831015
planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty

diff -r 43a465506940 -r b602bf9f81d2 picard_CreateSequenceDictionary.xml
--- a/picard_CreateSequenceDictionary.xml	Mon Jan 14 19:50:17 2019 -0500
+++ b/picard_CreateSequenceDictionary.xml	Mon Jan 14 19:53:59 2019 -0500
@@ -11,13 +11,14 @@
   <command detect_errors="exit_code">
     <![CDATA[
       rm '$output' &&
+      ln -s '$reference' reference.fa
       picard CreateSequenceDictionary
-        REFERENCE='$reference'
+        REFERENCE=reference.fa
         OUTPUT='$output'
     ]]>
   </command>
   <inputs>
-    <param name="reference" type="data" format="fasta,fa,fasta.gz,fa.gz"/>
+    <param name="reference" type="data" format="fasta,fa"/>
   </inputs>
   <outputs>
     <data name="output" type="data" format="sam"/>