Mercurial > repos > dfornika > mob_suite

changeset 18:dce4f8d7b19f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/phac-nml/mob-suite commit 4046a822176aafd34a2ae8dc24ad6d0337fafbe6-dirty
author dfornika
date Tue, 25 Jun 2019 15:36:27 -0400
parents 0dc3dc9226e4
children 115b462224cf
files compress_plasmids.xml
diffstat 1 files changed, 0 insertions(+), 26 deletions(-) [+]
line wrap: on
line diff
--- a/compress_plasmids.xml	Tue Jun 25 15:19:25 2019 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,26 +0,0 @@
-<tool id="compress_plasmids" name="Compress Plasmids" version="1.4.9.1">
-  <description>Compress plasmid contigs</description>
-  <requirements>
-  </requirements>   
-  <command detect_errors="exit_code">
-  <![CDATA[
-    #for $input in $inputs
-        cp '${input}' '${input.element_identifier}.fasta' &&
-    #end for
-    mkdir 'plasmids' && mv plasmid_* 'plasmids' &&
-    tar -cvzf plasmids.tar.gz plasmids
-  ]]>  
-  </command>
-  <inputs>
-    <param name="inputs" type="data_collection" format="fasta" multiple="true" label="Input" help="FASTA files with contig(s)"/>
-  </inputs>
-  <outputs>
-    <data name="output" format="tar" from_work_dir="plasmids.tar.gz" label="Plasmid contigs (compressed)"/> 
-  </outputs>
-  <tests>
-  </tests>
-  <help>
-  </help>
-  <citations>
-  </citations>
-</tool>